Pseudomonas taetrolens DSM 21104, TU78_RS14575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 5_452504_44.2116, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCACGCTCAGCCGTGGCGAAGTCTGCGTACGTCTTGATCGTGAGGATTGCCAGGTCTCGGTGGTCAGTGGCACGGCGCAGTTACAGCCCCTGCAAGGGC CGCCGTTGCTGTTGCCGGAGGGCCGGCAGGTGAGCCTGCGGGCGAGCGGGGCAGGCCCGGTGAGTGCCTTCGATGCCTCGCTGCCGGGCTGGCGTGAGCG GGTGCTGATGGCGCAGAACCAGCCCCTCGGGGATTTTCTTCGTGAGCTGGGCCGTTATCGCCCCGGCGTGCTGCGTTGGGATCCGGCCCTCGAAGCGCTG CGCGTCACGGGCAGCTTTCGACTGGACGATACCGATCGCATTCTTGCACTGCTGGCTGCCAGCCTGCCATTGCAGGTGCAGACACGCACCCGTTTCTGGG TCAGCCTGGTGCCGCGACATAAAAGTGTGTGAAGTCTGTCCCTTTTATTCACTTCACCGGTCATTCCACCTAAGTGAATAAAATACGAGAGCTTCCTCCC
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| DNA Sequence for Gene |
>TU78_RS14575
ATGCCTGCAGTACCGTCTTTGCGCGTGCACCCGTTGTTGCGATTTGGTCTTGTGTTGACCCTCAGTTCCAGCCCTTTATTGATCTCACCCACATGGGCCG ACACCGGCGAGCGCCGCAGCTATCAGGTGCCGGCCGGTAGCCTGGGCGCCGCATTGACGCGCTTTGCCGGGTTGGCGGGGGTCAATCTGGCGGTGGACCC GGCGTTGGTCAGTGGCCGCAACAGCAACGGGTTGTCCGGGGAATATGCGGTGGAAGAGGGCTTCGACCGATTACTGCAGGGCTCCGGCCTGCAACTGTTG CCTGCGGGCAGTGAGGCCTACACGCTGACGCGGGTGGCCGCCGACAGCGGCAGCGTGCAATTACCCACGACCTCGGTACTGGGTGCCGACGGTGCAGCGG GTGCCGAGGTCTTTGCCGGCGGGCAGGTCGCACGCCGGGGGACGCAGGGCTTGCTCGGTTCCCGAGATTTCATGGAAACCCCGTTCAGCATGACCACATA CACCCAGGAAGTGGTCAAGAATCAGCAGGCCCGGACCCTGGGTGACCTGATCGCCAATGACCCCTCCGTTCGGGTGACCAATCCGGCCGGAGGCCGCTAC GAGCAGTTCACCATTCGCGGCTTTAGCCTGTTCAACAGCGATGTCTCTTACAACGGCCTTTACGGCATCCTGCCGACCTATACGATCGATATGGAAATGG TCGATCGGGTAGATATCCTCAAGGGCCCCAGCCAGCTCATCAATGGCATCTCGCCCCGCGGCAGTGTCGGCGGGGGGATCAACGTCGTGCCCAAGCGCGC TACCGACCAGCCGATCACCGAATTCACCGGCAGCTACGCCTCCAATAGTCAGGTCGGCGGCGCCGTGGATGTCGGGCGTCGGTTCGGTGACGAGAACCAG TTCGGGATACGCTTCAATGGCGTAAAGCAGTCGGGTGACACCGAGTGGGACCATCAGAGCGTCGACCGTGAGATGGCGGTCGTGGGGCTGGACTTTCGTG GCGAACGCTTGCGGCTTTCGACTGATATCGGGCACACCGAACGCGATACCGATGCCCCTCAGGAGCGGGTGCAGGTCGGTCCGAACGCCAAGGTCCCGAA TGCCAATGATGTGCGCCATAACTACGCTCAGGCCTGGAGCAAGGCCCGCACCCGGGACACCTTCGGCACGTTGAACGCTGAATATGACGTCAGTGATTCG ACCCTGCTATACGGCGCAGTGGGCGTGCGTAAAAGCAACCACGATTTCCTCCGCCATGCCGTGTCGGTCACCAACGATGCAGGGGATTTCAGCGTGCAGC CGCGGGACTTCACCCGTGACGAAAATGTCAGGACAGCCACCGCCGGGGTACGTACCTGGTTCCACACCGGGCCGGTGAGCCATGAAGTCAATCTGGCGGC CAACGACTTCTACATGGACTTTGAAAATGGCGGTGCTCGCTATGCCCCATCATCCAGCAATCTCTATCACCCAGTACAAACACCCAAGCCCGACACACCG ACGCGAATTGACCCTAAGGTTTATACCGAGAACCGCTTCAGTGGCGTGGCTCTTTCCGACACTCTCGGTTTCTTTGGTGACAGGCTGCTTCTGACACTGG GCACGCGCTGGCAGCGGGTCAAGGTGGATGACTGGAGCAATGGCATCAAAGGTGCCACAGCCTATGACGAAGAAAAGGTCTCGCCCTCGGGCGGCATCCT CTACAAGGTGACCGACGAACTGTCGCTGTATGCCAATTACATGGAAGGCCTCAGCCAGGGCAAGATCGCCCCGTCGACAGCGGTCAACGAAGACCAGATA TTCCCGCCTTTTGTCAGCCGTCAGGTCGAGGTGGGCGCCAAGTATGACCTGGGCTCGCTGGCGATCACCGCCAGTGCGTTCCGCATCAAGCAGCCTGCTT ACGAGACCAACGCCACGACGCGGGTGTTTGGCCCTAGCGGCAAGCGGCAGAACAGCGGCGTGGAACTGAGTGTCTTTGGCGAACCCCTGAGCGGATTCCG CGTTCTCGGCGGCGTGATGTACATCGACAGCAAACTGACCGACACCACCGGTGGCGCCTTCAACGGCAACCAAGCGCCTGCCACGCCGAAGTACAACGTC AACCTGGGGGCCGAATGGGATGTGCCTGCCGTCCAGGGGCTGACCTTGAACGGGCGGGGCATCTACACCAGTTCGCAGTACCTGGACCAGGCCAACACCA AGGAAATCGATGCCTGGGAACGCTTTGACGTGGGCGCGCGCTATGCCTTCAAGGTCGACAGCACCGCCGTAACACTGCGCGCCAACATCGAGAACGTCCT CGACAAACGATACTGGAGCTCGGCCGGCGCCTCGGATGACAGCGAACCGGGCCTGACCCTCTCAACACCCAGAACCTACCTGCTTTCAGCCACCGTGGGC TTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCGACTCAAATACAGCAGCGACAAGGATCGTCGCTTAAGCAAAAGACATGCAAGGAGGCAGCCGGATTCGGCTCGAAAACTCGCAGCCCGGACCATAG CCCTATGATTTTTCGAGTGTTTTATCCTGGGACTGAATAAAAAAATCTCCATGAATGAGCACTAACCAACTTGCCTCATTGGCGCAGGCTCTATATATTC ACCCACCTGTCACGCAGGCGCTTGAGCACACAGATTGCAAAAGCCACGTCTGCCTGACCCGCTTCACAGCGCTACCGCCCGAATGGCGAAACTGGTAGAC GCATGGGACTTAAAATCCCCCGCTCGTAAGGGCGTCCCGGTTCGATTCCGGGTTCGGGCACCATCTATATCAAGGGCTTGCAGGCGATCCGCGTGCAGGC CCTTGTTGTTTTCCGGGCCGCAATTATTTATCTGGGCCGCAATTCACTTTGTCGGCGTGACCTTTTTGCCAATTCGCTTGCGGATATAGTTCTCGGTCAT
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVPSLRVHPLLRFGLVLTLSSSPLLISPTWADTGERRSYQVPAGSLGAALTRFAGLAGVNLAVDPALVSGRNSNGLSGEYAVEEGFDRLLQGSGLQLL PAGSEAYTLTRVAADSGSVQLPTTSVLGADGAAGAEVFAGGQVARRGTQGLLGSRDFMETPFSMTTYTQEVVKNQQARTLGDLIANDPSVRVTNPAGGRY EQFTIRGFSLFNSDVSYNGLYGILPTYTIDMEMVDRVDILKGPSQLINGISPRGSVGGGINVVPKRATDQPITEFTGSYASNSQVGGAVDVGRRFGDENQ FGIRFNGVKQSGDTEWDHQSVDREMAVVGLDFRGERLRLSTDIGHTERDTDAPQERVQVGPNAKVPNANDVRHNYAQAWSKARTRDTFGTLNAEYDVSDS TLLYGAVGVRKSNHDFLRHAVSVTNDAGDFSVQPRDFTRDENVRTATAGVRTWFHTGPVSHEVNLAANDFYMDFENGGARYAPSSSNLYHPVQTPKPDTP TRIDPKVYTENRFSGVALSDTLGFFGDRLLLTLGTRWQRVKVDDWSNGIKGATAYDEEKVSPSGGILYKVTDELSLYANYMEGLSQGKIAPSTAVNEDQI FPPFVSRQVEVGAKYDLGSLAITASAFRIKQPAYETNATTRVFGPSGKRQNSGVELSVFGEPLSGFRVLGGVMYIDSKLTDTTGGAFNGNQAPATPKYNV NLGAEWDVPAVQGLTLNGRGIYTSSQYLDQANTKEIDAWERFDVGARYAFKVDSTAVTLRANIENVLDKRYWSSAGASDDSEPGLTLSTPRTYLLSATVG F
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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