Pseudomonas taetrolens DSM 21104, TU78_RS12410

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR44757	DIGUANYLATE CYCLASE DGCP	-	-	2	548	0.0
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	127	287	7.2E-29
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	134	291	4.71E-42
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	305	553	6.8E-84
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	300	555	2.9E-96
FunFam	G3DSA:3.20.20.450:FF:000001	Cyclic di-GMP phosphodiesterase yahA	-	-	301	555	1.1E-88
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	118	290	1.0E-49
Pfam	PF00563	EAL domain	IPR001633	EAL domain	306	541	1.2E-68
Pfam	PF13426	PAS domain	IPR000014	PAS domain	15	116	4.3E-11
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	15	126	3.49E-19
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	130	288	8.78865E-50
SMART	SM00086	pac_2	IPR001610	PAC motif	76	118	0.0012
CDD	cd01948	EAL	IPR001633	EAL domain	306	543	5.58917E-108
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	1	131	4.0E-25
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	132	298	1.4E-46
SMART	SM00052	duf2_2	IPR001633	EAL domain	300	546	1.3E-112
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	130	284	6.7E-39
SMART	SM00091	pas_2	IPR000014	PAS domain	4	70	0.0013
CDD	cd00130	PAS	IPR000014	PAS domain	13	115	8.17274E-7
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	7	124	8.4E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.