Pseudomonas taetrolens DSM 21104, TU78_RS12080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 4_596648_47.1758, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATTGGCCCGTGATGGTGCGCGGGATGCAGTATTTAACGTGTATGAATCGCTGTTCATCGAGCCGCCCAAAGACCCCACCGTCGAGATCACGCTACTCA GCGACCCGACAATCAAGGTCAAGGGCCAGATCCGCGAAATCACGCCCACCGTCGCGGCGCAAAGCGGCACGCTGCAAATCAAGGTGCAGCTCGACACACT CCCCAAAGGCATGGAGTTGGGCGCGGTGGTCAGCGTTATTCTGAATTCGGTGCCGACTCGCAGCATGGAGCTGCCATGGTCGGCGCTGACCAAGGAGGTT AGCGAACCGGCCGTGTGGGTGGTCGACGAACACAACAACGTACGCTTGCAGCGGGTCAGGGTCGGGCGTTACCTGACCGGCAGCGTCATCATCAGTGAGG GGCTCAAGGACGGAGACAAGGTGGTGATCGCAGGCGGGCAACTGTTAAACCCCGGCATGCATGTCGAAATCGCGCCCCTGCCAGCCGAGGGAACACAGCT
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| DNA Sequence for Gene |
>TU78_RS12080
ATGAGCCGGATCTGGATCATGCCACTGGCGGCCGCGCTGTTGATCGGCTGCTCCGAAGAGAAAATCCCTGAGCCCGCTCGCCCGGCATTGTATGTCGTGG CACAACCCGAACTGGCGCAAAACCTAGGGCGCTTTGCCGGCACGATTGAAGCCCGGTATGAAAGCACATTGGGTTTTCGTGTACCGGGACGGATTGTGCG CCGCTATTACGACGTGGGCGCCGTGGTGAAACAGGGCGATATTCTGGCCAGTCTCGACCCCACCGATCAGCAAAACAACCTGCGTGCCGCCCGGGGTGAC CTGGCCAAAGTGCAGGCACAACTGATTAACGCCAAGGCCAATGCCCGACGCCAGCAGGAGCTGTTCGACCGGGGCGTGGGCGCTCAGGCCCAGCTCGACA TTGCCCAAACCGACCTGAAAACCACCCAGGCCTCAATGCAACAAGCCGTGGCGGCGGTCAATCAGGCTCAGGACCAACTCAGCTACTGCACCCTGCGTGC TGACCATGATGCGGTCATCACCGATTGGCAGGCTGAAGCCGGCCAGGTGGTGAGTGTCGGGGAAGAGGTGGTCACACTGGCCCGCCCCGACATCAAGGAA GCCGTCATCGATTTGCCGGGGCCGCTGGCCGACGCATTGCCCACGGGGATCGAGTTCCGGGTTGCCGGCCAGCTCGACCCGAACGTCAATACCGCAGCGC ATGTGCGCGAAATCGCGCCCCAGGCCGACAGCGCCACCCGCACTCATCGCACCCGCCTGACACTGAGCCAGACACCCGCAGCATTCCGGCTCGGCAGCTC CGTCAGCGTGACGGTCAGCAGCCCGATAGCCGAGCATTTCAAAATTCCGCTGAGCGCGCTGCAAGAAACCGACAACCACAGCCAGGTGTGGGTCATCGAC CCGACTACCCATGCCGTTAATCCCCGTGACGTGACAGTACTGCGGCGCGATGCACACAACGTGTTGCTCTCGGGTGGCGTAAAAAGCGGTGACAAAATTG TAAGCGCCGGCGTTCACAGCCTAAACCCCGGACAGACAGTCAGACTTGATAAGGAAAGCTCACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGGAAATTCAACCTGTCCGAGTGGGCCCTGAAACATCAGTCGTTCGTCTGGTATTTGATGTTTATGGCGGTGGTCGCCGGAATTTTTTCGTACATAAA TCTAGGACGCGAAGAGGACCCGTCCTTTGCCATTAAAACCATGGTGATCCAGACCCGATGGCCTGGCGCAACCGTCGATGAAACACTGCTGCAGGTCACC GACCGGATTGAGAAGAAGCTGGAAGAGCTCGACTCACTCGACTACGTGCAAAGCTACACCCGACCCGGTGAGTCCACGGTGTTTGTGTTCCTGAAGGACA CCACCAACGCCAAGGCCATTCCGGAAATCTGGTACCAGGTTCGCAAGAAAATCGACGATATTCGCGGCGACTTCCCCCAAGGCATCCAAGGCCCGGGCTT CGACGATGAATTCGGGGATGTGTACGGCACCATCTATGCCTTTACCGGTGACGGCTTCAGCATGCGTCAACTGCGCGATTACGTGGAGCAGGTGCGCACC
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| Amino Acid Sequence |
>RND transporter
MSRIWIMPLAAALLIGCSEEKIPEPARPALYVVAQPELAQNLGRFAGTIEARYESTLGFRVPGRIVRRYYDVGAVVKQGDILASLDPTDQQNNLRAARGD LAKVQAQLINAKANARRQQELFDRGVGAQAQLDIAQTDLKTTQASMQQAVAAVNQAQDQLSYCTLRADHDAVITDWQAEAGQVVSVGEEVVTLARPDIKE AVIDLPGPLADALPTGIEFRVAGQLDPNVNTAAHVREIAPQADSATRTHRTRLTLSQTPAAFRLGSSVSVTVSSPIAEHFKIPLSALQETDNHSQVWVID PTTHAVNPRDVTVLRRDAHNVLLSGGVKSGDKIVSAGVHSLNPGQTVRLDKESSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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