Pseudomonas taetrolens DSM 21104, TU78_RS09500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 3_672223_44.3836, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGCCCCTGGACGGCGTGTTTCCGGCCATCGGCGACCTTGAAGGACTGCAACGGGCTGTTCGACACGCTTATGACATGGGGTATGGTGGTGCCCTGTGC ATTCATCCGAAGCAGGTGGCCGTCATTCATGGTGCCCTTGCCCCCAGCCCGGACGATCTGGAATGGGCGCACAGAGTGGTCGAAGCGAGTTCGGCCGCGA ACGGTGCCGGTGCCTTCCAGCTGGATGGGCAGATGGTGGATGCCCCGGTGTTGCTGCGGGCTCAGCGGCTTTTGGCTCAGATCGCCGGCTGACAACGACG GGCAACCGCTATGCTGAAGATCAAGCCCAAAAGATGGCGTTCAGCTCAGCCGAACGCAGGGTTATACAAAAGCTGATTCTCGAAACGCGATCGACTGGGC CATCTTACGATTGGAAACGCCTTGAAGAAGCCTCGCACGCAGTGACCTGCAACGGTTCGCAGAGGCTGAACACTCTTACAACAATAAAAAGGTGATATCG
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| DNA Sequence for Gene |
>TU78_RS09500
ATGTTGAAGCTGACCAAGGCGCTGTTCTGCGCCGCCGCAGTCTCCATGGCAGGCCTGGCTCAGGCGGCCGACCCCATTGTCATCAAGTTCGCCCATGTGG TGGCGGAGAACACGCCCAAGGGACAAGGCGCCTTGATGTTCCAGAAACGAGTGGCTGCCGACCCCAAGCTGAAGGATAAAATCAAGGTCGAGGTGTACCC GAACTCGTCATTGTTTGGCGACGGCAAGGAGATGGAAGCCTTGTTGCTGGGTGATGTGCAGATGCTGGCGCCGTCCCTCGCGAAATTCGAGCACTACAAC AAACAGGTGCAAATCTTCGACCTGCCCTTCCTGTTCAACGACCTGGCGGCTGTCGACCGCTTCCAGCAAGGTCCGCAGGGTAAAGCGTTGCTGACCTCGA TGGATGACAAGGGCATCCACGGCCTGGCTTACTGGCATAACGGCCTCAAGCAACTGTCGGCCAACAAGAAAGTGATCCTGCCCAAGGATGCGCGTGGCCT GAAGTTCCGCGTCCAGGCCTCCAGCGTGCTTGAAGAGCAATTCAAGGCCATCCGTGCCAACCCGCGCAAAATGAGCTTTGCCGAGGTTTATCAGGGCCTG CAGACCGGCACGGTCAATGGTACCGAGAACACCTGGTCCAACTACGAAAGCCAGAAGGTCCACGAAGTACAGCCATTTTTCACCGAGACCAACCATGGCC TGATCGATTACATGGTCATCACCAACGCCAAGTTCTGGAACAGCTTGCCGGAAGATGTTCGCGGTGAACTGCAAGCGATCATGGATCAAGTGACCGTTGA AGTGAACAAGCAGGCTGAAGCGCTGAACCAGACCGCGAAACAGAAAATCATCGACGCCAAGACCAGCGAAATCGACACGCTGACAGCTGAGCAACGACAG CAATGGCGCGAAGCCATGCGCCCGGTCTGGGACAAGTTTTCCAACGACATCGGCGCGGACCTGATCAAGGCCGCGGACGGCGCCAACAAGGATTCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCCCGCCCTTCACTGATCCAGGCCACAGCCTGTCAGGCCGTGATGTGTGCGTGGCTACCCGGCCCGAGGTAGCCACCCTCTCTATGTTCGGAGAATGC TTATGCAAACGCTCAGGCGAGTCTGGGAGCATTTCGAGGAAGGGATGATTGCCTTCCTCCTGGCTGCCATGACGCTGGTGACGTTCGTCTACGTCATGTT GAATAACTTATATACGTTGTTTTATACGCTCAGCGATCGATGGGCGTTCAGCAGCGATTTTTTCGCGGCAATCGGCGACCACTTGATGGGATACGCCCAG GAAATGACCTGGAGCGTCGCCTTGACCAAGGCCCTGTTTGGCTGGCTGATTTTTTTCGGTATTTCCTATGGGGTGCGCACGGCGGGCCATCTGGGTGTCG ACGTGCTGGTCAAGAAAACCGGCAAAGCGACACAACGGGTGCTGGCCATGATTGCCTGCGCCTGCTGTCTGGCCTACGCCGGCCTGTTCCTGGTGGCGAG
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| Amino Acid Sequence |
>C4-dicarboxylate ABC transporter
MLKLTKALFCAAAVSMAGLAQAADPIVIKFAHVVAENTPKGQGALMFQKRVAADPKLKDKIKVEVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEHYN KQVQIFDLPFLFNDLAAVDRFQQGPQGKALLTSMDDKGIHGLAYWHNGLKQLSANKKVILPKDARGLKFRVQASSVLEEQFKAIRANPRKMSFAEVYQGL QTGTVNGTENTWSNYESQKVHEVQPFFTETNHGLIDYMVITNAKFWNSLPEDVRGELQAIMDQVTVEVNKQAEALNQTAKQKIIDAKTSEIDTLTAEQRQ QWREAMRPVWDKFSNDIGADLIKAADGANKDS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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