Pseudomonas taetrolens DSM 21104, TU78_RS07760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 3_672223_44.3836, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCTTGCCCAAGGCCGGAGCAACGCCAAGCCCTATGGGGCCCGGCCGGCAAACGTCAGGGTAGCGCTGCTCACCGACGAGACGTATTCACGGACCGCTC ACCTCGACTTCATCTCCAACACCGCGGACCGCGGGACCGGAACCATGCGGGTCCGCGCGGTAGTCGATAACCCCGACGGGCAATTGACCCCCGGACTGTT TGTCAGGGTCAAACTGGAGACCGGGGCGCCGCAAACCAGGGTGCTGGTGTCCGATCAGTCGATCGGTACCCACCAGGGCAGCCGTTATGTGCTGGTGGTC GACAAGGACGATACGACCCAATACCGCGCCGTCGAAACCGGCAACATGCTCGACGGTTTGCGCGTGATCGAGCACGGCCTGCAGCCGGGCGAACGCATCG TCGTCAAGGGGCTGGTGCGTCCGGGCATGCACGTCACGCCGCAGCCTGTCGCGATTGACGGTACACCCGTTGCGGTGCAGCAAACCGTGGGGGCCGCGAA
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| DNA Sequence for Gene |
>TU78_RS07760
ATGAATTTTCCACGCTTCTTTATTGATCGCCCGGTGTTTGCCATCGTCCTTTCGATTTTGATGATGATCGCTGGAATCGTTGCGTTTTTTCAGTTGCCGC TCAGCGAATATCCGGCAGTCACCCCGCCCACCGTGCAAGTGACCGCCGCCTACCCGGGCGCCAACCCCAAGGTCATTGCTGACACGGTGGCAGCACCACT GGAACAGGCGATTACCGGGGTCGAGGGCATGCTGTACATGTCGTCGCAGTCGGCAACGGATGGCCAGATGACCCTGACGGTCACCTTCGCACAGGGCACC GATGCCGATATGGCTCAGATCCAGGTGCAAAACAGGGTCTCGCGCGTGCTCTCGCGTTTGCCTGAAGAGGTACAGCGCCAGGGCATCGTCACGAAGAAAA CCTCGCCGGACATTCTGATGGTGGTTCACCTGTTGTCGCCCGACAAGCGCTTCGACCCGCTGTTCATTTCCAATTACGCCTACCTCCAGGTGCGCGATGA GTTGTCACGCATCCCGGGCATCAGCGACGTCCTGGTTTGGGGCGCCGGCGAATACAGCATGCGGCTCTGGCTCGATCCGGATCTGATCGCCGCACGCGGG CTGACGGCCGGCAACGTGATTGCCGCCGTGCGCGAACAGAACGTGCAAGTCGCCGCCGGTTCCGTGGGCCAGGCGCCCAATTCCAGTGCGGCATTCCAGG TGACGGTGAACACGCTCGGGCGGTTGACCGACGAGGAGCAGTTCGGCGACATCATCATTCGTACGGGCAGCGAAGGGCAGGTCACGCGTTTACGCGATGT CGCCCGCATCGAAATGGGCGCTGATGGTTACGCACTGCGCAGCCTGCTTGACGGCGAACCGGCCGTTGCGCTGCAGATCATTCAGAGTCCAGGCGCCAAC GCACTGGATGTTTCCCGGGCGGTACGCGACACCATGCAGCGGCTTGAAACCCACTTCCCGGAAGGACTTGTCTCGCGCATCGCCTATGACCCGACAGTCT TCGTCCAGGCGTCCCTCGAGTCGGTTGCGATCACACTGCTGGAAGCGATTCTGCTGGTGGTGATCGTGGTCGTGGTGTTCCTGCGTAACTGGCGGGCTTC GCTTATCCCCCTGATGGCGGTGCCGGTGTCATTGGTCGGGACCTTTGCGGTCATGCATCTGCTGGGTTTTTCGCTCAACACGTTGTCGCTGTTTGGCTTG GTGCTGTCGATCGGGATCGTGGTGGACGACGCCATCGTGGTGGTCGAGAACGTAGAGCGTCACATCGACAATGGCGAGGAGCCCACGCAAGCTGCCAAGC GCGCGATGGCGGAGGTCACCGGCCCGATCATTGCGATCACCTCGGTGCTGGCCGCCGTTTTCATTCCGACCGCGTTCCTGAGCGGTCTGCAGGGTGAGTT CTATCGTCAGTTCGCCTTGACCATCGCGATCTCGACCCTCCTGTCGGCGGTTAACTCGCTCACCCTCAGTCCGGCGCTGGCCGGCATGCTGTTGCGACCC CGTCTCGACGCTGTCGAGCTTGATCCGAATAGTCTGCGAGGGCGCGCTGATCGTGTGTTGCAAGCCCTGAGCCGACCCTTCCAGCGTGCGCCTGACGCTT ACAGCAAGACGGTACGCAAGGTTTTGCGACGCCGGGGCGGGGCGCTGGTGGTTTATGGCGGACTGCTCGTGCTGACCTTCTTCGTGTTCCAGTCGGTGCC CCCGGGGTTCGTGCCGATGCAGGACAAATATTACCTGGTGGCGATCGCCCAGTTACCCAATGCGGCATCGCTGGATCGAACCGAAGAAGTCGTCAAGCAG ATGACCCGGATCGCGCTGGCCGAACCGGGTGTCGAAAGCGTTGTCGCCTTCCCGGGGCTGTCGATCAACGGTTTCGTCAATGTGCCCAACGCGGCGGTGA TGTTCATCATGCTTGATCCGTTCAAAGCTCGAACGACGCCCGATCTGTCCGCGAGCGCGATCACGGGCCGTCTGCAAGCGCAATTCAGCAGCCTCCCGGA CGGCTTTCTCGGCGTGTTCCCGCCACCCCCGGTGCCCGGTCTTGGAGCCACCGGCGGCTTCAAAATGCAGATTGAAGACCGCGGCGGGGCCGGGCTCGAA GCCCTGGTCCAACAGACCCATATCCTGATGACCAAAGCCTCTGAATCAGGACTGGTGGCCGGCCTCATGACCAGTTTTGATGTCAATGCCCCGCAACTCG ACGTGGTTATCGACCGGACCCGGGTCAAAAGCCAGGGTGTCCTGCTGGCAGATGTATTCGAAGCGCTCCAGGTCTATCTGGGCTCGTTGTATGTCAACGA CTTCAACCGCTTCGGCCGCACCTACAAAGTGATGGCCCAGGCGGATACCGAGCATCGAATGCAAGCCGAAGCCATTACCCGCTTGCAGGTGCGCAACGCT GCCGGGGACATGCTGCCTTTATCCTCGTTTGTCACGGTCACGCCAGGCTCAGGACCGGACCGGGTGATTCGCTACAACGGCTATCCTTCGGCCGATATCA CGGGCGGCGCGATGCCGGGCATCAGTTCGGGGCAGGCGGTGGCTGCCATGGAGCGCCTGGCGCAGGAAGTGCTGCCTGAAGACATGAGCTTCGAGTGGAC CGACCTGACGTATCAGCAAAAGCTCGCCGGAGACTCGGCGCTGTTCATTTTCCCGCTGTGCGTACTGCTCGCTTATCTGATCCTTGCCGCGCAATACAAC AGCTGGTTGCTGCCTCTGGTGGTCATGCTGATCGTCCCGATGTGTCTGCTGAGCGCGATCATTGGCGTGTGGCTGGTGGGCGGCGACAACAACGTGTTCG TCCAGATCGGGTTGATTGTGCTGGTCGGTCTGGCCGCCAAGAATGCCATCCTCATTGTCGAGTTTGCGCGAAGCCGTGAAGCCGAAGGCGCAACCGCACT GGAGGCCGTTATCGAGGCGTGTCGACTGCGGCTGCGACCGATCCTGATGACCTCACTGGCGTTCGTTGCCGGCGTTGTACCGCTGGTGTTGGCCAGTGGC GCCGGGGCGGAGATGCGCCATGCCATGGGCATTGCTGTCTTCGCCGGCATGCTCGGCGTGACGCTGTTCGGGTTGTTCCTGACACCGGTGTTTTATGGGG TGGTACGCGGCCTGGCAGCACGCTTCGCGCAGCACAGGTCAACAACAACGGCGACCCGCAGGGCGGAGAGCGCATCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGAACACCTATCGAACGGTAATGCTCCCGCTAAGTGCGCTGATCCTGCTGGCTGGATGCATGAGCGTGGGGCCCGACTACACACCGCCTTCGCAGCCGTC GTCGCAGTTTCCGGCGAGCTTTGGCGAGCTCCCGGCGGGGCTGGCTCCAGGGAATGTCGAGGTCGAGTGGTGGCGGGTCTTCGACGAACCCGCGCTCACG GCGTTGATCCAGCGGGCGCTGGTGGCAAATCTCGACATCGGCATCGCTGCCGTACGGCTAGAAGAGGCACAGGCCATGTTGCGCGAAAGCCGACAGGGTT TTCTGCCTCGCGGGGGGCCCGCGCTGGGCTATGAGAACCGCCGTGGCAGTGACGTCGAAACGTCGCCAGGCCAGTCTCGGCAGAACGAAACCTACCGCAG CGCACTCGATGCCTCCTGGGAAATCGATCTCTTCGGGCGGGTCAGAAGGTCCGTGGAAGCGGGCAGGGCCCACGCGGGCTCTCGCGAAGCGCTGTTGCGC
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| Amino Acid Sequence |
>transporter
MNFPRFFIDRPVFAIVLSILMMIAGIVAFFQLPLSEYPAVTPPTVQVTAAYPGANPKVIADTVAAPLEQAITGVEGMLYMSSQSATDGQMTLTVTFAQGT DADMAQIQVQNRVSRVLSRLPEEVQRQGIVTKKTSPDILMVVHLLSPDKRFDPLFISNYAYLQVRDELSRIPGISDVLVWGAGEYSMRLWLDPDLIAARG LTAGNVIAAVREQNVQVAAGSVGQAPNSSAAFQVTVNTLGRLTDEEQFGDIIIRTGSEGQVTRLRDVARIEMGADGYALRSLLDGEPAVALQIIQSPGAN ALDVSRAVRDTMQRLETHFPEGLVSRIAYDPTVFVQASLESVAITLLEAILLVVIVVVVFLRNWRASLIPLMAVPVSLVGTFAVMHLLGFSLNTLSLFGL VLSIGIVVDDAIVVVENVERHIDNGEEPTQAAKRAMAEVTGPIIAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAISTLLSAVNSLTLSPALAGMLLRP RLDAVELDPNSLRGRADRVLQALSRPFQRAPDAYSKTVRKVLRRRGGALVVYGGLLVLTFFVFQSVPPGFVPMQDKYYLVAIAQLPNAASLDRTEEVVKQ MTRIALAEPGVESVVAFPGLSINGFVNVPNAAVMFIMLDPFKARTTPDLSASAITGRLQAQFSSLPDGFLGVFPPPPVPGLGATGGFKMQIEDRGGAGLE ALVQQTHILMTKASESGLVAGLMTSFDVNAPQLDVVIDRTRVKSQGVLLADVFEALQVYLGSLYVNDFNRFGRTYKVMAQADTEHRMQAEAITRLQVRNA AGDMLPLSSFVTVTPGSGPDRVIRYNGYPSADITGGAMPGISSGQAVAAMERLAQEVLPEDMSFEWTDLTYQQKLAGDSALFIFPLCVLLAYLILAAQYN SWLLPLVVMLIVPMCLLSAIIGVWLVGGDNNVFVQIGLIVLVGLAAKNAILIVEFARSREAEGATALEAVIEACRLRLRPILMTSLAFVAGVVPLVLASG AGAEMRHAMGIAVFAGMLGVTLFGLFLTPVFYGVVRGLAARFAQHRSTTTATRRAESAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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