Pseudomonas taetrolens DSM 21104, TU78_RS06250 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 2_681804_45.4493, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGTCGGGCGCAGTTAGGCAGGATGGCTTTTTATCGTGATATTCAACAGGATGTCTGACCGCCGTATCGAGCGCCATCAACTGGTGTGTTTTTTGAAAG TGTTCAATCGGTTCACGGATAAACCCTTGGGTTTTCTGGGTAATGTGACCGAAGACCGAATCATGTTGATCAGCCAGCTGCCGTTGCTGGTGGGAGGCAA TTTTGAATTTCGCCTCAAACTGCCCGCCCATGAAGGTGGCCAGCAGTTTATTGATCTGTCGGCGCGCTGCCTGTGGAGCCATGAGGATACCTCGCCACAT TATTACGACTCCGGTTTTATCCTGTTCAAACCGCCTGCCGAATACGCCTCGCTGATCAGTGCCTTGCATCGGTACTTCAGTTTTCATCCCTTGCAAGCCT CTGCATAAGGCGAGCTTCTGGCTCGGGCGTCAGGTGCAGGGCTGGCCGTGCCCGGGCCTGAACGCCTAGACTGATGGGGTCTACTGTTCAGGAACACCCC
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| DNA Sequence for Gene |
>TU78_RS06250
|sbcB
GTGACCTCTATTTTCTGGTACGACTATGAAACCACCGGCATCAACCCGCGCTGCGATCGAGCCGTGCAGGTCGCCGGTATCCGCACCGATGCTGAACTCA ATGAGATTGATCAGCCCCTCAACCTTTATTGCCAGCCCAGCGACGACATCCTGCCTCACCCCATGGCTTGCCTGATTACCGGCATCACCCCCGGGCGCCT GGAAGATAAAGGCCTCGGTGAAGCCGAGTTCATGACCCGGACACATGCCCAGCTGGCGCTGCCCGGTACCTGCGGTGCGGGCTACAACACATTGCGTTTC GATGATGAGGTCACGCGATACAGCCTGTATCGAAACTTTTTCGACCCTTACGCACGTGAGTGGCAGGGCGGCAACAGCCGTTGGGATTTGATTGATGTGG TGCGCACGGCATATGCCTTGCGCCCCGAAGGGATTGTCTGGCCTCAGGAAGACGGCCGAGTAACACTCAAGCTGGAGCGATTGACGGCGGCCAATGGCAT TGACCATGGTCAGGCTCACGATGCGTTATCCGATGTGCGGGCCACTATCGCGCTGGCGCGGCTGATCAGGTCCAGGCAGCCCAAGTTATATGACTGGTTA TTTCAATTAAGGACCAAACAGCGAGTGCTGGATCAGGTTCGCTTGTTACAGCCGATGGTGCATATTTCCGGGCGCTTTTCTGCGGCCAGGCATTATGTGG GCGTGGTATTGCCTCTTGCGTGGCATCCTAAAAATCGTAATGCGCTGATTGTGTGTGACCTGCACTTTGATCCCCAGCCTTTATTGGACATGGATGCCGA ATCATTGCGGGCGTTGCTTTATACACGTCGGGAAGACTTGCCCGAAGGGCAACTGCCAATACCGCTCAAGCTGATACACGTTAATCGTTGCCCGGTGGTC GCGCCCTTGAATGTAGTGCGTGCGCAGGATCAACAGCGTTTGCAATGGGACATGGCGCACTATGAGGCCCGTGCACGCCAGCTGACGGAGACGCAGGAAG TTTGGCAGGATAAGTTATCCGCCCTTTATGCCCGTGAAGACTTTACCCCCAGTGAAGACCCCGAGCAGCAGTTGTATGACGGCTTTCTCGGCGACCGTGA TCGTCGACTGTGTGAACAGGTCAGGCTGAGCGACCCCGAGCAATTAGCGAATGACGCCTGGCCTTTTGATGACGAGCGTTTGCCCGAGTTATTGTTTCGT TATCGGGCCCGAAACTTTCCTCATACCTTGAGTGCACAAGAACTCGAACGTTGGCATTTATTCTGCCAACAACGTTTGACCGATCCGGCCATGGGAGCAC CCCTGACCCTGGAAGCGTTTACGCAGCAGGCTGACGAGCTGTCCCGTGCGGCCACGCCCGCGCAGTTGAAACTGCTGGATGAGTGGAAGCGATACGCCCG GGGCTTGAGTCGTCGTGTCGGCCTGGACACACAAACCGAGCACTCAAGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATAAGCCCATAAAAAAACGCCAGCTTGCTGGCGTTTTTTTATGGGTGACGCAACAGCGTTGCGCACACGGTGTCACTTAGTCCAGCAAAGTAGCCCAGC CTTCAACCACGTCGCCGCCCCACTTGGATTTCCACTCTTTCAGCGTCTTGTGATTGCCGCCTTTGGTTTCAATCACTTCGCCGTTGTGCGGGTTTTTGTA CTGTTTAACCTTGCGGGCACGTTTGGTGCCGGTAGTTTTCACTACGCCACGGGGGGCTTTGCTTACTTTGGACTCTGGATCCAGCAGCGCGATGATATCG CGCAGCGATTTTTGATATTCGCCCATCAGGGTGCGCAGTTTACCTTCAAATTCCAGCTCGGTTTGAAGTTTGTCATCTTCCGACAGGTTCTTCAGGCGCG CTTGCAATTCTTTGATGGCTTCTTCTGTTGCGCGGTATTCGTTGATCAAGGACATGAGGATAACCTTATGTTGAAAAGGGTTTACAGGGAGACAGTGGCG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRCDRAVQVAGIRTDAELNEIDQPLNLYCQPSDDILPHPMACLITGITPGRLEDKGLGEAEFMTRTHAQLALPGTCGAGYNTLRF DDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPEGIVWPQEDGRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLIRSRQPKLYDWL FQLRTKQRVLDQVRLLQPMVHISGRFSAARHYVGVVLPLAWHPKNRNALIVCDLHFDPQPLLDMDAESLRALLYTRREDLPEGQLPIPLKLIHVNRCPVV APLNVVRAQDQQRLQWDMAHYEARARQLTETQEVWQDKLSALYAREDFTPSEDPEQQLYDGFLGDRDRRLCEQVRLSDPEQLANDAWPFDDERLPELLFR YRARNFPHTLSAQELERWHLFCQQRLTDPAMGAPLTLEAFTQQADELSRAATPAQLKLLDEWKRYARGLSRRVGLDTQTEHSS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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