Pseudomonas taetrolens DSM 21104, TU78_RS06200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas taetrolens strain DSM 21104 2_681804_45.4493, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTTTCTTTGATCACCGTGGTTGGCCCGTTGTTTTTGACGCTGGCAATGCCTTTGTCCCGTGCCGCCTCACTGGAATATTGCTCGCTGCTGCCAATGATCT GGTGATTGGCCGCCTTGAGGTTGAAGTACGGTTTACCGTCTTTGGCTACTTTCTTGTCATAACGCTCATCCAGCGGGCTGTTGACTTGCACCGACGCAAT CCCGCTTTTTGCGGCTGCGAGGGTGGTGTACTGCTCACTGGTCAATATGGTTTCAGCATTCGCCGCTTTCAACACAAACCGAAATTGCCCGCTGCTGGTT TTGCTCAGTTCGTACCAACCCGACATAGTCTTCTCCTGGATGTTGAACACGCATATGTCTTCTCCAGTAAAGCGCTCATCAGACTTTTAGCCATTTATCT GTAGGAAATAACGGAAGATAATTTTTAAAGGCAGACAAATAGCAATAATTCTCGATACCATTCAAGAATAAATTGCATTGCTGTATCCACAAGGATCTTC
DNA Sequence for Gene
>TU78_RS06200
ATGTCTCGCTTTAAATCCGACCCGCTGGCGGCCGAATCTTTCCGTGAGTGCTATGCGCAGATTTTGCAGTTCCTGCGTAAACGCACGGATAACGCCAGCG ATGCCGCAGACATGACCCAGGATGTCTTCACGCAATGGCTGGGTTATCAGAACCGGGCCAAGGTCGAACAACCCCGAGCCTTTTTGTTCCAGGTGGCGCG CAATCTGTTGCGTGATCACTGGCGCCGTCAGCAGGTACGACAGGCCGTGCACCCGCACAATGCCGAACATGCACCCGAGCCCTTAAGCGATGAGAAGGAT GATCCGATGGCCGCCGTTCAGCGCTTGCAGCGCCTTGCGCAGCTCAAGACCGTGCTCGCCGAACTCTCCCCTCGCCGACGCGAAGCCCTTATGCTGCATC GCTTTGAAGGCCTGAGCCAAGCACAGATCGCTGAACGAATGGGAATCTCCGTAAGCATGGTGGAAAAGCACATTGCCTTTGCCTTGTTGCACTGCAAGCA GCACCTCCAACGGGACACGGGCAAGGAATCGCAGCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCTTTTCGAGCGACCGATAACGACAGCATCGACACACAAGCGGCCAACTGGTTTTCGCGCAACCGTAATGATCGCAGTCACGCGAGCCGCGACCTGTT CAATACGTGGCTGGCCGACCCTGCCCATGCACAGGCGTACGCCGAATTCGAAGCTTTGTGGACAGAACTCGGCGAGCTTGAAGCGCCCAATGCACCGCTT GCCCTGCCCGTGCGCAAGCGTCGGCGCACAGGCTTGGCACTCGCCACTGCAGCCGCCGTACTTTGCGCCGTGTTTGCCATGAATATCGGCGCGCCCGTCA CGCTGCAGCAACAGCAGATCGTCACCCGGGAGCAAGGCGCACGCACCGTGGTATTGGCCGACGGCAGCCGCTTGACCGTTAATGCCAATACCCGGGTTCG TGTCGACTTCAGCGCCCATCAGCGCACGCTTTATCTGGATCAGGGCCAACTCTATATCGAGGTGGCACCCAATAAAGAACAGCCATTGGTGGTGCAGGCC
Amino Acid Sequence
>RNA polymerase sigma factor
MSRFKSDPLAAESFRECYAQILQFLRKRTDNASDAADMTQDVFTQWLGYQNRAKVEQPRAFLFQVARNLLRDHWRRQQVRQAVHPHNAEHAPEPLSDEKD DPMAAVQRLQRLAQLKTVLAELSPRRREALMLHRFEGLSQAQIAERMGISVSMVEKHIAFALLHCKQHLQRDTGKESQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site