Pseudomonas taetrolens DSM 21104, TU78_RS05475

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13180	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02163	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004252	serine-type endopeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	128	148	2.2E-51
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	265	371	6.2E-27
FunFam	G3DSA:2.40.10.120:FF:000007	Periplasmic serine endoprotease DegP-like	-	-	32	263	8.4E-96
SMART	SM00228	pdz_new	IPR001478	PDZ domain	382	461	1.2E-11
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	107	119	2.2E-51
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	383	470	1.71E-14
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	228	353	1.58E-25
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	380	472	1.2E-17
PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	-	-	388	465	4.8E-97
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	168	192	2.2E-51
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	310	322	2.2E-51
NCBIfam	TIGR02037	JCVI: Do family serine endopeptidase	IPR011782	Peptidase S1C, Do	32	468	0.0
CDD	cd00987	PDZ_serine_protease	-	-	270	359	2.18476E-25
Pfam	PF13365	Trypsin-like peptidase domain	-	-	98	231	4.6E-35
Gene3D	G3DSA:2.40.10.120	-	-	-	31	263	3.5E-84
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	224	241	2.2E-51
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	406	464	8.8E-7
CDD	cd00987	PDZ_serine_protease	-	-	383	468	8.76962E-17
Pfam	PF17820	PDZ domain	IPR041489	PDZ domain 6	406	459	1.4E-10
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	202	219	2.2E-51
SUPERFAMILY	SSF50494	Trypsin-like serine proteases	IPR009003	Peptidase S1, PA clan	30	261	1.82E-70
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	272	361	2.4E-15
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	240	386	1.4E-9
SMART	SM00228	pdz_new	IPR001478	PDZ domain	270	352	5.1E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.