Pseudomonas taetrolens DSM 21104, TU78_RS04540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 2_681804_45.4493, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGGGCGCTCAGGTTACGGTCTTGTCGGGGCGGGTCGGGGTGAAGGCGGGTAAGGGCGCGCCGCAGCAGATTCTCACTGCCGATCAGCAAGTGGCCTA TGACGCTGGCGCGACCGATACCGTGCATCAGGTCGACAGCCGGGCACGATCGGCCTGGCGCGAAGGTTGGCTGACGTACTCCAGGACGCCGCTGGCCGAG GTCGTGGCAGACCTCAAACGGTATTACCCAGGGCAGATTGTGCTGCTCAATAGCCAACTGAGCGCGCGGCGCATCAGCGGCAGCTTCCCCAGCCAGGACC CGCAAGCGGTACTCGATTCCTTGCAAGGTGTGCTCGGGTTTGAGCAGCACCATGTGTTGGGGCGGCTGATCGTGTTGCGTTGAGTGCTCTCTGAAATTAT TTTTCACGGCGTAGTGAGGTAAACCTCGGGCTGATCCGTGTAGTGCTTGAAAATGCGAAAAATTCGCATTCCCTAACGGGTCGACACACAGGTCATGAGT
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| DNA Sequence for Gene |
>TU78_RS04540
ATGAAGTCCAGGGTAACGTCAGTGGCAGGCGGTTCGGTAAAGCAATGGCTAGGGGCTTCTGCGCTGGTGATGGCGGGGCTGGCGTTAACACCGGTGGGTG TGGCGATGGCGACCGAGGCGTCGCAACAGCAGACAGGCACCCTGTTTGATTTTGACCTGCCTGCCGAACCCTTGCCCCGGGCCTTGAATGACTTCAGCCG CTTGACCGGCCTCAGCGTGGTCTATACCGACGAAGCGCCTTACGGCTTGCAAGCGCCGGCCATCAAGGGCCGCATGCATGCCGAACAGGCCTTGCAGCAG ATGCTTGCGCAGTCGGGTTTCAATGCTCGTCGTACCGATCCCCGCACCTTTGCCCTGGAGCCTCAATCCACCGCAGGCGCGCTGAACCTCGGCGCCACCA GCATTACTTCGATGGCACCCGCCGACACCGGCTATCAGCCGCCAGCCACCACTTCGGTGATGCGCGGTACTGGCTCGTCGATGGAAACGCCGCAGACCAT CAACGTGGTCGCCGCCCAGGTGATTCGCGATCAGGCCCCCCGTAATCTGGATGATGCGCTTAACAACGTCAGTGGTATCACCCAGGGCAACACGCTGGGC AGCACGCAGGATTCGGTGATGAAGCGCGGTTTTGGCGACAACCGTGACGGCTCGATCATGCGCGATGGCATGCCGCTGGTGCAGGGCCGGGCACTGGGGG CTGCGACCGAACGCGTCGAAGTCCTCAAGGGACCGGCCTCGTTGCTGTACGGCATCCAGGACCCGGGCGGGGTGGTCAATGTGGTCAGCAAAAAACCACA GCTGGAGCAATACAACGCGCTGACCGTGCGCGGCTCCACTTATGGTTCCGGGAAAAACGGCAGTGGCGCCAGCCTGGACAGCACGGGCCCGCTGGGGGAT TCGGGGCTGGCTTACCGGATGATCATTGACCATGAAGACGAAGACTACTGGCGCAATTTCGGCACCCATCGCGAGACGCTGATTGCACCGTCGCTGGCCT GGTATGGCGACAACACTCAAGTGTTGCTGGCCTACGAACACCGCGAATTTCTATCACCCTTTGACCGAGGCACCGCAATCAATCCGGCGACCAATCACCC GCTGGATATCCCGGCCACGCGGCGCCTCGATGAACCGTTCAATAACATGGAAGGGCGTTCGGACCTGTACCGCCTGGAAGTCGATCACGACCTCAACGAC GACTGGAAAGCCCACTTCGGTTACAGCTGGAACCGCGAAACCTACGATGCCAGCCAGGTGCGTGTTACCGCAGTCAATCCGGCCACGGGCACACTGACCC GAAAAATGGACGGCACCCAAGGCGCCATTTCCACTGACCGGTTCACCACCGTCAGTCTGCAAGGCAAGGTGAACGCTGCGGGCATGCAGCATGAACTGGT ATTTGGCGTGGATGACGAGTACCGCAAAATCCACCGTGCCGAGTTGATCCGCCAGAATAGCCAGTCCATCTTCGATTACGAAAACCCCGAGTATGGCCAG GAAGTTGCCGGCACCACGGTCAGCGCCAGTGACAGCAATCAAACCGACTTGCTGCGCAGCGACTCGTTATTCATGCAGGATTCCATTCACCTCAACGACC AGTGGATTCTGGTGGCGGGCGCCCGCTTCCAGAAGTACGACCAACTGGCTGGCAAAGGCATACCGTTCACCGCCAACACCGACACCCATGGCGTCAAGTG GGTCCCGCGTGCCGGTCTGGTGTACCGCTACACCGACGAGTTGTCGTTCTATGGCAGCTACACCGAATCGTTCAAGCCCAACTCCACCATCGCCCCGTTG AGCGGTGGCGTGGTGCTGGACTCATCCATCGCGCCCGAGCAGGCCAAGTCCTGGGAACTGGGCGCGAAACTGGATATTCCGGGGCGCATTACCGGCACTG TGGCCCTGTTCGATATCAAAAAACGCAATGTCCTGGTGTCATCGACGGTGGATGATGAAACGGTGTATTCGGCGGCGGGCGAGGTCCGGTCACGGGGCCT CGAACTGGATGTCAGCGGTCAGTTGAGCGATCAGTGGAGCGTGATCGGCAGCTATGCCTATACCGATGCTGAAGTGACCAAAGACACGACCTACCAAGGC ATGCGCTTGCAGAACGTGGCGAAAAACAGCGGTTCGCTGTCGGCGGTCTATGACTTCGGCAATATCGTGGGGGGCGACACGTTACGGGTGGGGGCGGGCG CACGTTACGTGGGCGAACGGGCCGGTGATGCGCTGAACGATTTCGATCTGCCGGCCTACACCGTGGCCGATGCGTTCGCCACCTACGACACCCGGATCGA AGGGCAGAAGGTAACGTTTCAGTTCAACGTCAAAAACCTCTTCGACCGGACTTACTACACCTCGGCCGCGAGCCGCATGTTCGTTTCCATCGGCGACTCG CGCCAGATGACGTTCTCCAGCACGTTGGCGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCATTACCTGAACGCCGTCCGGTATTCACCCGGCGTGCCGCCCAGGTGTTGCTTGAAGCGGTTGGCGAAGTGGCTGGCGCTGGCGAAACCGCACGCCA GCGCCACATCGCCCAGGGCCAGGGATGAGTTGCGCAACAGGTCGCGGGCCCGGGCCAGGCGCCGTGCCAGCAGGTATTGATGAGGCGGCACGCCGAAGCT TTCGCGAAACATGCGGGCAAAGTGGTAGGGCGACAACGCACATTGCGCGGCTAATTGGCCGATGCTCAAGGGCTCACCCAGGTGGTGTTCAATGGTCTCC ACCAGTTGCCGGCGTTGATGGGCTGCCAATCCGCCCTTGAGTTGCAGCCCTTCGCGGCGTCCAATTTGGCTCAGCAATGCATGATCGAGCAGGGCACTGG CCAGGCTGCTGGTAAGCAGGCGTTCGCCGGGCTCATTCCAGTTCATCCGGATCAATTGATGAAAGCGCCGGGTTTGCTCCGGGTCATCAAGAAACGTGCT
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| Amino Acid Sequence |
>TonB-dependent receptor
MKSRVTSVAGGSVKQWLGASALVMAGLALTPVGVAMATEASQQQTGTLFDFDLPAEPLPRALNDFSRLTGLSVVYTDEAPYGLQAPAIKGRMHAEQALQQ MLAQSGFNARRTDPRTFALEPQSTAGALNLGATSITSMAPADTGYQPPATTSVMRGTGSSMETPQTINVVAAQVIRDQAPRNLDDALNNVSGITQGNTLG STQDSVMKRGFGDNRDGSIMRDGMPLVQGRALGAATERVEVLKGPASLLYGIQDPGGVVNVVSKKPQLEQYNALTVRGSTYGSGKNGSGASLDSTGPLGD SGLAYRMIIDHEDEDYWRNFGTHRETLIAPSLAWYGDNTQVLLAYEHREFLSPFDRGTAINPATNHPLDIPATRRLDEPFNNMEGRSDLYRLEVDHDLND DWKAHFGYSWNRETYDASQVRVTAVNPATGTLTRKMDGTQGAISTDRFTTVSLQGKVNAAGMQHELVFGVDDEYRKIHRAELIRQNSQSIFDYENPEYGQ EVAGTTVSASDSNQTDLLRSDSLFMQDSIHLNDQWILVAGARFQKYDQLAGKGIPFTANTDTHGVKWVPRAGLVYRYTDELSFYGSYTESFKPNSTIAPL SGGVVLDSSIAPEQAKSWELGAKLDIPGRITGTVALFDIKKRNVLVSSTVDDETVYSAAGEVRSRGLELDVSGQLSDQWSVIGSYAYTDAEVTKDTTYQG MRLQNVAKNSGSLSAVYDFGNIVGGDTLRVGAGARYVGERAGDALNDFDLPAYTVADAFATYDTRIEGQKVTFQFNVKNLFDRTYYTSAASRMFVSIGDS RQMTFSSTLAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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