Pseudomonas taetrolens DSM 21104, TU78_RS00835
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 1_766794_46.3544, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGGATGAGTCAACCTTTAATGCATAAATGCAGCAAATAAGGCCGTGCCGCTCGTTTTGTGTGCTGCCGGGTTTATTCGAAAAATAGACGCGCACAAA AAAGGCCACTCTTTCGAGTAGCCTTTTTCGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTG CTCCATCCCGCGTCTGTGGGGTGGATTCTACAGCGATACGCTGGGGTGTCAAACGTTAATTTAGAAAAAACTGTTCTGGTTCAATCGGTTAGATAATAAC TGTGCAAGTGGAAAGGGCTGCAGGCCCTGTGCGCTATGGGTTTGACTCTATCAGAGACAGATGTTCGATTAGTTAAATATATTCAACGTGGATTTTTCCT ACGCTTGTCGGGGGTAATCAAGACTACTGGTGCTATATACAGTTCACGATGACATACTGACGCTCTGCATTGCCTACTCTCTTGAAGAACACTGCCTTAC
|
|
| DNA Sequence for Gene |
>TU78_RS00835
ATGACGCAGCGCAAAATCATCCACGTCGACTGTGACTGTTTCTATGCCGCTATTGAAATGCGTGATGACCCGAGCCTGGCGAACAAGCCGATGGCGGTGG GTGGCTCTGCGGATCATCGTGGCGTGATTTCTACCTGTAATTACGAAGCGCGGGCGTACGGCATACGCTCTGCGATGGCTTCCCGGCATGCACTCAAGCT GTGTCCGGATCTGATTATCGTCAATGGCCGAATGGACGCCTATAAAGAAGCGTCCCGAGAAATTCATGGCATCTTGCGTGATTACACCGAGCTGATTGAG CCGCTGTCATTGGATGAGGCTTATTTGGATGTTTCCGATAGCCCGCATTTTGCCGGTAGCGCCACGCGTATTGCCCAGGATATCCGGCGCCGGGTTTCCA ATCAGCTGCACATCACTGTCTCCGCGGGTGTGGCGCCCAACAAGTTTTTGGCCAAAATCGCCAGTGACTGGAAGAAGCCCAACGGTCTGTTTGTGATTAC TCCGGATCAGGTGGATGACTTTGTGTCGGCGCTGCCAGTCAATAAGTTGCATGGCGTAGGCAAGGTGACCGCAGACAAGCTCGGGCGCTTGGGTATCGAA ACCTGTCTTCAGTTGCGCGAGTGGAACAAGCTGGCGCTGGTGCGTGAATTTGGCAGTTTCGGCGAGCGGCTATGGGGTTTGGCACGAGGGATAGATGAGC GGTTGGTGCAGAGCGACAGCCGACGTCAGTCTGTGAGTGTTGAAAACACTTACGACACGGATTTACCGGACCTGGCCAGTTGTCTGGAAAAGTTGCCCGA GCTGTTGGCCACTCTGAATGGACGCATTGCGCGTATCGACAGCAGCTATCGCCCAGGCAAGCCGTTCGTCAAAGTGAAGTTCCACGACTTTACCCAGACC ACGCTAGAACAGTCCGGTGCCGGGCGGGATCTTGAGAGTTATCAGGGATTGCTGAGTCAGGCGTTTGCGCGCGGCGCCCGGCCCGTTCGGTTACTGGGGC TGGGCGTGCGTTTACAGGATTTAAGTGGTGGGCATGAACAGCTGGAGCTGTTCAAGCGTTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAATCCACCGCTGTAGGCATTGCTTCAGCCAACCCCGGGGTCAGCCACCAGGCGTCCGGCATTTTTGGTCAGGGACTGAAGGAATTCATGCTGTAACTC AGGATCGTTACGCGTGAGTTCGATCAGGCTTTGTTCCAGTTCGCTGGCTTCTTCTTCCAGCCCCAGCTCCGACAGACGCTTGACCCGATGAACCCACTGG CTGACGTCGTCGCCTTCCAGGTCGTCGTAGATCAGGTTGTGCGCTTCCAGCAGTTTGCCCCGAAGGTTGCTGCTGATCGACAGGGTTGAATCAGAGTGGG TTTCGTCCTGGGCATCTTCAACGGTAATGGTCAGTTTGCCGATGCGATTCAGGTCTTGCTCGGCAAACGGGCTGTCCAGCAGGTTGAGACGCAAGATGCC ATGCCGGTCGGTGGTGAGCTCATGATTTTGCTTGCCAGCCTTGACCATGACCGGACGCTCGGCCCACGGCAGGCTTGAGTATTCCAGGCGCTTGTCGCGC
|
|
| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPSLANKPMAVGGSADHRGVISTCNYEARAYGIRSAMASRHALKLCPDLIIVNGRMDAYKEASREIHGILRDYTELIE PLSLDEAYLDVSDSPHFAGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVDDFVSALPVNKLHGVGKVTADKLGRLGIE TCLQLREWNKLALVREFGSFGERLWGLARGIDERLVQSDSRRQSVSVENTYDTDLPDLASCLEKLPELLATLNGRIARIDSSYRPGKPFVKVKFHDFTQT TLEQSGAGRDLESYQGLLSQAFARGARPVRLLGLGVRLQDLSGGHEQLELFKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|