Pseudomonas taetrolens DSM 21104, TU78_RS00455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 1_766794_46.3544, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGGCTGATGCAGCCGTGGCGCTTTATCCGCATCACCGACCGTGAGTTGCGCGGCAAGGTCCAGGCCCTGGTGGAGGAGGAGCGGGTGCGTACTGCTG AAGCGCTGGGCGAGCGTTCCGATGAGTTCATGACCCTGAAGGTCGAAGGGATCAACGACTGTGCCGAGGTTTTGGTGGCCGCGTTGATGGATGACCGGGA AAAACACATATTCGGTCGCCGTACCCTGCCCGAAATGGACATGGCCTCGTTGTCCTGCGCGATCCAGAACCTGTGGCTGGCCGCTCGCGTCGAAGGGCTG GGCATGGGCTGGGTGTCATTGTTCGAGCCGCGGGCGCTGGCTGATTTACTGGGGTTGCCAGCGGGTGCCAAGCCCTTGGCGGTATTGTGTCTGGGGCCGG TAGAGGCCTTTTATCCGGCGCCGATGCTGGTGTTGGAAGGGTGGGCGCGCGCGCGTCCGCTGAGTGAGCTGGTGTATGAGAATTATTGGGGAGTGAGTCC
|
|
| DNA Sequence for Gene |
>TU78_RS00455
ATGAGTGTGGCGTTGCTGTGCGTGGCCGGGGTGGCGCTGGATGCGCTGTTCGGTGAGCCCAAGCGCTGGCATCCGCTGGTCGCGTTCGGCCGCATGGCCG GTCGCGTTGAGCAGCGTTTCAATTCCGGCGGCCGTGGCTGGCGCAGTCATGGCGTTACCGCCTGGGTGCTGACGGTCATTCCGCTGACGATTCTGGCGAC TGCGCTGTCCTGGCTGCCTTATATCGGCTGGCTGGTAGATATCCTGGCGTTGTACTGCGCGCTCGGAATGCGCAGTCTGGGCGAACATGTGCAGCCCGTG GCTGAAGCCTTGCGCAGCAATGATCTCGAGGAGGCACGTACACGGGTCGGTTATCTGGTCAGCCGTCAGACCAGCGAACTTGATTCCACCGAAGTCGCCC GCGCGGCGACCGAGTCCGTACTGGAAAACGGCAGCGATGCGGTCTTTGCCGCGATTTTCTGGTTTGTCGTCGCCGGTGCTCCGGGCGTGGTGCTCTATCG CCTGAGCAATACGCTGGACGCCATGTGGGGATATCGCAATGAGCGCTTTGAGCGTTTTGGCTGGGCCGCCGCCCGGATCGACGATGTGCTCAACTACATT CCTGCACGGTTGGTGGCGCTGACTTATGCCGTACTGGGTAAAACCCGCCTGGCCTTGAAGTGCTGGCGCAAACAGGCCCCGCAGTGGGACAGCCCCAATG CGGGGCCGGTCATGGCGGCCGGTGCCGGTGCCTTGGGCGTCGAATTGGGCGGTTCGGCGATTTATCACGGTGAACTGCATGAGCGTGCGCAACTGGGTGA AGGCGTGCCCGCCGATGCCGACTCGATTGGCCGTGGCTGGCAACTGGTGCAGCGAGGGGTATGGCTGTGGCTCTTGATCCTGTGCATGTGGAGTGAATTC TATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATGGTGGACGTTTACGCCAAGCGTCCTTGCACTACGGCATCGCCGAGGCGCAATGGCTGGACTTGTCCAGCGGCCTGGCGCCCTGGCCTTTTGCGATT CCCGTGATCCCCGAGCGTGCCTGGGCGCGGTTGCCGGAAACCGATGACGGGCTAGAACAAGCGGCCTGTACCTACTACGGCGCCGCCAATGTGTTGCCGG TGCCGGGCTCCCAGTGCGCGATTCAGTTGCTGCCTCGTTTGCGTCGTGGCGGCAAGGTCGGCGTGTTGTCGCCGTGTTATGCCGAACATGCTGAAGCCTG GCGTCGCAACGGGCACATCGTGCGTGAAGTGGTTGAGCAAGAGGTCGACTTCTACCTCGACAGCCTGGATGTGCTGGTGGTCGTCAATCCCAACAACCCG ACAGGGCTGAGTCTGACGCCTGAGCAGTTGCTGACCTGGCATGCACGGCTGGCACAGCGGGGTGGCTGGCTGGTGGTGGATGAAGCGTTCATGGACAACA
|
|
| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLCVAGVALDALFGEPKRWHPLVAFGRMAGRVEQRFNSGGRGWRSHGVTAWVLTVIPLTILATALSWLPYIGWLVDILALYCALGMRSLGEHVQPV AEALRSNDLEEARTRVGYLVSRQTSELDSTEVARAATESVLENGSDAVFAAIFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAARIDDVLNYI PARLVALTYAVLGKTRLALKCWRKQAPQWDSPNAGPVMAAGAGALGVELGGSAIYHGELHERAQLGEGVPADADSIGRGWQLVQRGVWLWLLILCMWSEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|