Pseudomonas taetrolens DSM 21104, TU78_RS21640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 11_172282_63.8884, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGTCAGACGCGGGTCGGCGTAGAGCAATCGGCCGTGGAAATTCGCCCCCTCAGGCACATTGATCTGCTCCTGCGGCTGGAAGCCGGGCAACAAGTCA CTTTCGATCGCGATGCCGCCGGTGAAATCGAGCGTTTGCCTTCCGCCTCCACCGCCTGGGTCAAAGGCATGTTGAGCGTGGATGACTGGCGGCTGGGGGA CTTTGTCGAGGAGCTGGGGCGCTATCGCCCGGGTGTACTGCGCTGTGCAACATCGGTTCAAGACTTGAGTATTTCGGGGGCTTTTCGGATCGATGACACC GAAACGGTTCTGGAGAACCTGGGTAAGACCTTACCGGTGAAGGTGCGTTATCTGACCCGTTACTGGGTCAGTATCGAACCGGCATAAGCGAACGCGCAAA ATGCTTTGGCCTTTAACCTTGCTGATTTCGATTCTCATCCGTCAATGACATAAGCCGCGACCGCAGCGCGTTTCTGCCATGACCATGCAAGGATCACCGA
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| DNA Sequence for Gene |
>TU78_RS21640
ATGCCCCCGCTCCCCCTCAATGCCACAACTAAAATAACGCGCGCTGTTCGCCTGGCGGTATTGGGTGCATCCCTCGCCAGCGTGTCCGGCCTGGCACTGA TGTCCACTCAGGCTTGCGCGCAAAGCCAGACGGCTTATCAGGTCGCCGCAGGCCCGCTGGGCAAGGCCCTTACCCAATTTGGCGTGCAAGCGGGGGTCAC TATTTCGTTCGACACCGAGCAGGCCCGGTACCTCAACACCGCCGGACTAGAAGGCTCGTACAGCATCGAGGAAGGCCTCGACCGTCTGCTCGCCAACAGC GGGTTGCAAGCACAGCGTCAGAGCAACGGTGGCTATGTACTTGTTGCCAGCAACCCCGAAGAGGCGCTGCAACTGGGGGCCACTCAAGTCATCACCAACC AGCTGGGCACGGTGACCGAAGGCACCGGTTCCTACACGCCCGGGGCCATTTCTACGGCCACCCGCCTGGTGCTGACACCCCGCGAGACGCCGCAATCGAT TAGCGTGATCACCCGTCAGCACATGGATGATTTTGCGCTCGACAATGTCGACGACGTGATGCGCCACACCCCCGGCATTACCGTATCGGCCTATGACACG GACCGGACCAACTACTACTCCCGCGGATTCTCGATCAATAACTTCCAGTACGACGGGATTCCCTCCGCCGTGCGTAACGTCGCTTATTCGGCGGGCAACA CCCTGAGCGACATGGCGATCTATGACCGGATCGAGGTTCTCAAAGGCGCCTCCGGCCTGCTCAGCGGGGCAGGTTCCCTGGGGGGCACCATCAACCTGGT GCGTAAAAAACCCACCCACGAATTTCATGGCCATATCACCGCAGGAGCCGGTTCCTGGGACAACTACCGTACCGAAGTGGACCTCAGCGGCCCGTTGACC GAAACCGGTAATGTCCGCGGTCGCGCCGTGGCGGCCTATCAAGACAGGCAGTCGTATATCGACCGCTACTCGAACCAGAGTTCGGTGTTCTACGGCATCC TTGAAGTCGACCTGACGCCCGACACATTGCTGACCGTGGGTGCCGACTATCAGGACAACAAACCCCAGGGCTCTACGTGGTCGGGGAGCTTTCCGCTCTA CAACTATGCGGGTGAGATCAACGATGCCAAACGCTCATTCAGCAACGCCACCGACTGGAGCAGTTGGCAGCAATACACCCGCACCGTCTTCGCGACCCTG GAACAGGATCTGGGCAGTGGCTGGGTGGGTAAGCTGCAACTGGACCACAAGCTCAATGGCTACGATGCCCAATTGGGAGCGATCCAGTTCAACCAGCCCG CAGCTGATGGCACCGCCACAATCAACGCTCAACGTTACAAGGGCGAAACCACCAGCGATGCGGCCGACCTTTATGTCAGCGGCCCCTACAATTTTCTGGG GCGAGAGCATGAACTGGTGCTGGGCGGCTCGATCAGTACCGCGAACTGGAAAGGCAAAGGTTACTGGGACGTCACGTTCGCCACACCCAACCTGGTCGAT TACTTCAACTGGAACGGGCACCTGGCCAAACCTGACTGGGGCCGTGCGTCGCAAATCAGCGATGACACCGTGCGCCAGACAGGCATCTACGCCACCACGC GCCTGAACATCACTGATGACTTGAAGCTCTTCCTGGGCGGGCGAGTGGTCGACTACACCCTGACCGGTACAACCAATACCTACCGCGAGTCGGGGCGTTT GATTCCTTACGCTGGCATCACCTATGACCTCACCGACTACCTGACCGCGTATGCCAGCTACACCGATGTGTTCATGCCTCAGGAGTTCTACAACCTGGAT CGCAACAGCAAGATGCTGGACCCGGACGAGGGAGAAAACTATGAAATCGGCCTCAAGAGCGAGTTTTTCGATGGCCGCCTGAACGCCAGCCTGGCGTACT TCGAAGTCAAGGAAAGCAACCGCCCCACCCCGGACGATGACTGGAACAACCTGTCACCCACCCCGCCCAACTACGCCTTCAAGGGTACCGCCGCGAAAAC CAAGGGCTACGAGCTGGAAGTGTCCGGTGAGCTGAGCCCGGGCTGGAGCCTGCAGGCCGGGTATACCCACAAGGTGGTGCGCGATGACACCGGTAAAAAG ATTTCGACCTTCGAACCCGAAGATCAGCTCAGCTTCTACACCATCTACAAACTCAAGGGTGATCTGAACAAAGTCTCCGTGGGCGGTGGCGCACGCTGGC AGAGCACAGCCTGGCAAGAGATGTACAACAGCCCCAAGGATCGCTACGAAGATTTCTCGCAAAAACCCTACTGGGTTGTGGATCTGATGACCCGCTATCA ATTCACGGAAAACCTGTCGACCACGCTCAACGTCAACAACGTGTTCGACAAGTACTACTACACCAACATCGGCTTCTATAACTCAGCGATCTATGGCGAG CCACGCAACTTCATGCTGACCACACGCTGGGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTCACCGCCAATCACTCAAGCGACTGAGTTTCACCTGCAGGAGCGAGTACGCTCGCGCCTGCATTTGTCCTTCAGTGCACCGCAAGGCAAGGCTTTGG CCTGGACACACACCCGACAGATGACCCCACATCATCTATCCCTTGAACATTCATCCTTTGTCAGCCGGCGCAGCGATGCCCTTTAATGGATGAAAATACA GGGAGGCCGACATGATTTTGGGCAAAACACTTGAGAGCTGGTGCACCCGCTACCCGCTGATTCGCGAGCTGATCGCGCTGCAAGAAACCACCTGGTTCAA CCCTGGGGTTGCGCCGGTGGCACAGGCGCTTACCGATACGGGACTGACTGACGCTGATGTCGCCGACGCCAGCGCGCGCCTTGACCGGTTTGCGGCCTAC CTGCGGGTGGCCTTCCCTGAAACAGAGGGCAGTGCTGGCATTATCGAGTCCGACATCCAGCCCATGACGCATCTGCATCCATTGCTAGCCGAGCGTTACG
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| Amino Acid Sequence |
>ligand-gated channel
MPPLPLNATTKITRAVRLAVLGASLASVSGLALMSTQACAQSQTAYQVAAGPLGKALTQFGVQAGVTISFDTEQARYLNTAGLEGSYSIEEGLDRLLANS GLQAQRQSNGGYVLVASNPEEALQLGATQVITNQLGTVTEGTGSYTPGAISTATRLVLTPRETPQSISVITRQHMDDFALDNVDDVMRHTPGITVSAYDT DRTNYYSRGFSINNFQYDGIPSAVRNVAYSAGNTLSDMAIYDRIEVLKGASGLLSGAGSLGGTINLVRKKPTHEFHGHITAGAGSWDNYRTEVDLSGPLT ETGNVRGRAVAAYQDRQSYIDRYSNQSSVFYGILEVDLTPDTLLTVGADYQDNKPQGSTWSGSFPLYNYAGEINDAKRSFSNATDWSSWQQYTRTVFATL EQDLGSGWVGKLQLDHKLNGYDAQLGAIQFNQPAADGTATINAQRYKGETTSDAADLYVSGPYNFLGREHELVLGGSISTANWKGKGYWDVTFATPNLVD YFNWNGHLAKPDWGRASQISDDTVRQTGIYATTRLNITDDLKLFLGGRVVDYTLTGTTNTYRESGRLIPYAGITYDLTDYLTAYASYTDVFMPQEFYNLD RNSKMLDPDEGENYEIGLKSEFFDGRLNASLAYFEVKESNRPTPDDDWNNLSPTPPNYAFKGTAAKTKGYELEVSGELSPGWSLQAGYTHKVVRDDTGKK ISTFEPEDQLSFYTIYKLKGDLNKVSVGGGARWQSTAWQEMYNSPKDRYEDFSQKPYWVVDLMTRYQFTENLSTTLNVNNVFDKYYYTNIGFYNSAIYGE PRNFMLTTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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