Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS26430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig82, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACGCGGTGTTCAATGTCTATGAGTCGCTGTTCGTTCAGCCGCCAACCGATCAACCGGTGCAGGTCACGTTGCTCGATAACCCGAACATCAAGGTCA GCGGCAAAGTACGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAAATCAAGATCGCTCTGGACCCGTTGCCTGAAGGCATGGACCTGGG CTCGGTGGTCAGCGTGGCGCTGAGCGCACCGGCCAATGCCAGTGTCGAGTTGCCGTGGGCGGCGCTGACCAAGGATCTCGGCGAACAGTTGGGCAAGCCT GCCGTGTGGGTGGTGGATGAACAGGGCAAGGTCAATCTGCGCAAGGTCACCGTCACCCGTTACCTGACCGCCAAAGTCATCATTGGCGACGGGCTCAAGA GTGGAGAGAGAGTCGTGGTGGCAGGCGGACAGTTGTTACATCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAGCAACAGAATGCACAGGTGCAGCC
|
|
| DNA Sequence for Gene |
>P406_RS26430
ATGAAGCGTCCGTTATGCCTGTTGCTGGGCAGCCTGCTGTTGAGCGGCGTTTTATTGAGCGGCTGTGGCAAGGATGAAACACCTCCCGAGCCGGTGCGTC CCGTGGTGTTCGTCGAGGCCAAGCCTGAGTCGAATCAGGATTTCGGGCGTTTCGCCGGCAACATCCAGGCGCGTTATCAAAGTGTGCTGGGCTTTCGTGT CGCGGGGCGCATTGCCCGACGCGACGTTGACGTAGGTGCTGAGGTCAAGAAAGGCGATTTGCTTGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTG CGTGCCCGGCAGGGCGACCTGGCCAATGTTCAGGCGCAATACATCAACGCCCAGGCCAATGCCCGCCGTCAGCAGGAGCTGTTCGATCGCGGCGTCGGTG CCCAGGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGTTCGTCGCAGGAGCAGGCCAGAGCCGCGGCTCAACAGGCCCGCGACCAATTGAG TTACAGCGAGCTGCGCAGTGATCACGATGCGGTGGTTACCGAGTGGAAAGTCGAAGCCGGACAGGTGGTGACAGCCGGTCAGGAAGTCGTGACTCTGGCG CGGCCGGACATCAAGGAAGCGGTGATCGACCTGCCCGATACACTGGCCGATCAGTTACCGTCCGACGTGGTCTTCACCGTCGCCAGTCAGCTGAATCCGG AAGTGAACACCACCGCCACCCTTCGCGAAATCGAACCCCAGGCCGACCGCACGACACGTACGCGCCGTGCGCGTCTGTCGCTGGCGCAAACGCCAGCGGC GTTCCGCCTGGGCACGGCGATCAGCGTGACGCTCAGCTCGACCATCACGCCGCGCATGCGTCTGCCGATCAATGCCCTGCAGGAAGTCGATGGCAAACGC CAGGTCTGGATCGTCGACTCGCAGAGCCAGACGGTGAACCCCAGAACGGTGACGATTGCCAGCCGTGACAGCGACTCCTTCGTGCTGACCGATGGCGTCA AAGCGGGTGAAAAAGTGGTGAGCGCGGGCGTCAACAGCCTCAAGCCGGGCCAAAAAGTCAAAGTCGATGAGGAAAGCCCGCGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGGGAATTTCAATTTATCCGAGTGGGCCATCAAGCATCAGTCGTTCGTCTGGTACCTGATGTTCGTCGCGCTGTTGATGGGCGTGTTTTCCTACATGAA GCTGGGCCGCGAGGAAGACCCGTCCTTCACCATCAAGACCATGATTATCCAGACCCGCTGGCCGGGCGCGACGGTGGACGAAACCCTCGAGCAGGTCACC GATCGCATCGAGAAGAAGCTCGAAGAGCTGGACTCGCTGGACTACGTGAAGAGCTATACCCGACCGGGCGAGTCCACGGTTTTCGTGTACTTGCGTGATA CGACCAATGCCAAGGCGATACCGGAAATCTGGTATCAGGTGCGCAAGAAAGTCGATGACATCCGTGGGCAGTTTCCGCAGGGGCTGCAAGGCCCGTCGTT CAACGACGAGTTCGGCGATGTGTACGGTTCGATCTATGCGTTTACCGCAGACGGTTTCTCGATGCGTCAGTTGCGTGACTACGTCGAGAAGGTTCGCGCC
|
|
| Amino Acid Sequence |
>RND transporter
MKRPLCLLLGSLLLSGVLLSGCGKDETPPEPVRPVVFVEAKPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNAV RARQGDLANVQAQYINAQANARRQQELFDRGVGAQAQLDIALTDLKTASSSQEQARAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEVVTLA RPDIKEAVIDLPDTLADQLPSDVVFTVASQLNPEVNTTATLREIEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTITPRMRLPINALQEVDGKR QVWIVDSQSQTVNPRTVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKPGQKVKVDEESPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|