Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS24335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig70, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGATTCATGGCGATGGGTCAGGTCAGCCAGCAACTGATGCAATTGTGCAGCATCGGTAAAAACCTCGGCCTGCCCATAAGCATGCACGGCCACATAA TTCCACGTCGGTACGACCTTGCCGTGCTCCCTCTTGCTCGGATAGAACGAGGGGCTCACGTAGGCATCGCCGCCAGGAAAAATCACCAGTGCCTCGGCGC CGGAGCTAAGTTGCTGCCACTGTGGATTGGCTTTGGCCAAGTGCCCGTAAAGCGTGCCATACGAACCTTCATCGCGGCGTAACAGCAGTGGCAGGTGGGT GGCTTGCAATCCTTCTGCGCCGTGCGTGACCAGAATCGCCAGGCGCGTCTGCTCCATCTGCTGGTGCAGGCTCGGTGTGTCGTTGTCCTTGAAAGCGGCA GGGATGTACATGGGGAATGTCCTTGGCTGATAACAGGATCGTAGGCAAGGCATTGGTCTGATGTAAGATCCATTTTTTATCGTTTTAACAGGGCCAATGC
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| DNA Sequence for Gene |
>P406_RS24335
ATGCCTGATCTCAGTGTCGCGTTTCCGTCCACACTCACCGGTATCGTGCTGGACCCGAATCAGGGCCTGAGCAAGCAGCTTTATGGCCTGTTGCGCCAGC AGGTCCTCGATGGGCGTCTGAGCAGTGGCACGCGCCTGCCAGCCAGTCGCGATTTGGCGCATTCACTCGGCATCTCCCGTAACAGCGTGATCCGGGCCTA CGACCAGCTGTATGCCGAGGGTTTCATCGAGGGACGTGTCGGCGACGGTACGTATGTGGCGCAGCTCTCTGAACCAGGCGCTGCGCCTCGGCGGACCGGT CGCAAAAAACTATCCACCAACTTACCCACAGGTGTATCCACAGGGTTATACACAGGTTTGTCCACAATCGCGGCTGAAATGCCGTCAGATTCCTCCTGTG AAGTTATCCACAGCCCGGTGCTCGCGCTGCTGGAAAAACATCATCTGCATGAACCACCGACGGGTCGTCCGCGGGCCTTTCGGGTAGGCGTACCGGCGTT CGATCTTTTCCCCTTTGCCTTGTGGGGCAAGCTGTATGCCGCTTTTTGGCGCAAGCCGGACCTTGCTCAGCTCGGTTATGGGTCGGCGGCGGGAGACTCG CGGTTACGTGAACTGATTGCGGTCTACCTGCGCTCATCGCGTGGGCTGCATTGCAGCGCTGAGCAAATTGTGATCACCAGTGGTGCACAGCACGCGATCA GCCTTTGTGCACAGTTGCTTCTTGCCCCGGGCGAGGGCGTCGCCGTGGAGAATCCGGGGTATCGGGCGGCCGGTCATGCGTTTGCCCTGGCAGGTGCTCG ATTGCACGGCGTGGCTGTGGATAACGACGGCATGCGTTGCGCCGACCTTGAGCAGGCAGACTGCAGGCTGGCCTACGTGACGCCTTCACACCAATACCCG ACCGGCGTGGTGATGAGCCTGGCGCGGCGCCTGGAATTGCTGGCCTGGGCTGAGAAACACCAGGGCTGGATTGTCGAGGATGATTACGACGGTGAGTATC GCTACAGTGGTTCACCCTTGGCGCCCCTGGCTGCGCTCGACCGCAACGCGCGTGTGCTCTACGTCGGCACGTTCGGCAAAATCGCCTTTCCGGCGCTGCG CCTCGGGTATCTGGTTTTGCCAGAGCCACTGGTGCCGGTGTTCAGCCAGCGCAAGGCTGTGGACATGCGTCATACCGAAGTAGGGGTTCAGGCGGTCATG GCGCAATTCATTGCGTCGGGTCATTTCCAGCGACACATACGTCGCATGCGCCGCGCGGCGCTCAGTCGTCGCAATGTGCTGCTGGATAACTGGCCGGCCG ATATTCCGGGATGCGCGGCAATGCCCAGAGTGGTTGCCGGGCTGCATGTCATGGTCAAGGTCGACAGCGTGGCGCGTGAGCAGGCGCTGATTGCCAAGGC CAATGGCGTCGGGGTCGAAATGAATGCCCTGAGTGACTACTGGCTGCCTGATTCCACCGAGCCTGTGGATAACCGCGCCGGGCTGGTGCTGGGGTTTGCC GCAGTGCCCGAGGACGAGATGGTCGAGGCATTGAACAGGCTGCGCGAGGTCTGGTCCGAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGTTGGCAGGCGTATAATCTGCGCTTTCTGTTACCTGTCCTTGAGATACCCATGAACAACTCTCTTACTGCAACACCCGGACGCAAGTTCGGCGCGC CGCTGGCTGCGCTGTTCCTGCTGCTGATGGGCGCCCAGTTCCTTCTGCTCAGTGTCGGCACCCGCCAGGTAATGCTGTGGATCGTCGGCGCGGCGTTGGG CGTAACGCTGTATCACGCGGCATTTGGTTTCACCTCGGCGTGGCGGGTGTTCATCCGCGAGCGGCGCGGTGCTGGCCTGCGCGCGCAAATGGTCATGCTG GCGGTCGCCGTGGTGCTGTTTTTCCCGGCACTCGGTGCGGGCACGCTGTTCGGCCAGCCAGTCACTGGCCTGGTTGCGCCGGTCGGGATTTCGGTCGTCG TCGGCGCGTTCATTTTCGGCATTGGCATGCAGCTGGGTGGCGGCTGTGCGTCCGGTACATTGTTCACTGCCGGTGGTGGCAACGCGCGAATGCTGGTGAC
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MPDLSVAFPSTLTGIVLDPNQGLSKQLYGLLRQQVLDGRLSSGTRLPASRDLAHSLGISRNSVIRAYDQLYAEGFIEGRVGDGTYVAQLSEPGAAPRRTG RKKLSTNLPTGVSTGLYTGLSTIAAEMPSDSSCEVIHSPVLALLEKHHLHEPPTGRPRAFRVGVPAFDLFPFALWGKLYAAFWRKPDLAQLGYGSAAGDS RLRELIAVYLRSSRGLHCSAEQIVITSGAQHAISLCAQLLLAPGEGVAVENPGYRAAGHAFALAGARLHGVAVDNDGMRCADLEQADCRLAYVTPSHQYP TGVVMSLARRLELLAWAEKHQGWIVEDDYDGEYRYSGSPLAPLAALDRNARVLYVGTFGKIAFPALRLGYLVLPEPLVPVFSQRKAVDMRHTEVGVQAVM AQFIASGHFQRHIRRMRRAALSRRNVLLDNWPADIPGCAAMPRVVAGLHVMVKVDSVAREQALIAKANGVGVEMNALSDYWLPDSTEPVDNRAGLVLGFA AVPEDEMVEALNRLREVWSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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