Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS23405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. coryli str. NCPPB 4273 contig67, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCGGCCAAGGTCAAGCTGACCCTGGAAGACAACAGCGTCTATGGCCAGGAAGGCAAACTGGAATTCGCCGAAGTATCGGTTGACCAGAC CACCGGCTCCGTGACCCTGCGTGCCGTGTTCCCGAACCCTGAACACCGTCTGCTGCCGGGCATGTTCGTTCATGCGCAGTTGCAGGCTGGCGTCAATTCG AAAGCCATTCTGGCGCCGCAGCAAGGCGTGACGCGCGACCTGAAAGGCACGCCGACCGCCATGGTCGTCAATCAGGACAACAAGGTTGAAATGCGTACGC TGGTGGCCAATCGCACCGTGGGCAGCGACTGGCTGATCGAAGACGGCCTGAAAGAAGGTGATCGTGTCATCACCGAAGGCTTGCAGTACGTCAAACCAGG CGCCGAAGTGAAAGTCGCCGAAGCGACCAACGTCAAAGGAGCAAACCCGGCACCTGCCCCGGCCACTGATAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>P406_RS23405
ATGTCGAAATTCTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCGATTTCCAGCCTGCCGATCAACC AGTACCCGAGCATCGCACCGCCCGCCATCGGTATCCAGGTTACCTATCCGGGCGCGTCTGCCCAGACGGTGCAGGACACTGTGGTTCAGGTGATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTCAGCTCGGAAAGTAACTCCGACGGCAGCATGACCATCACGGCGACCTTCAATCAGGGCACCAACCCG GATACGGCGCAGGTTCAGGTGCAGAACAAGCTCAACCTCGCGACCCCGCTGCTGCCGCAGGAAGTGCAGCAACAGGGTATCCGCGTCACCAAGGCAGTGA AGAACTTCCTGATGGTGATCGGCCTGGTGTCGGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATTGTGTCGAACATGCAGGACCCGATCTC GCGGACCTCGGGTGTGGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTGGACCCGGCCAAGCTGAACAACTTCCAGCTGACGCCA GTGGACGTGAAAGACGCGATCACCGCGCAGAACGTTCAGGTGTCGTCCGGCCAGTTGGGTGGCCTGCCATCGATCAGCGGCCAGCAGTTGAACGCCACGA TCATCGGCAAGACGCGTCTGCAGACCGCAGAGCAGTTCGGCAACATCTTCCTCAAGGTCAACACTGACGGCTCGCAGGTTCGCCTGAAAGACGTCGCCAC GGTCGGCCTGGGCGCAGAGAACTACAGCACCGATTCGCAGTTCGACGGCAAACCGGCTTCCGGTCTGGCGATCAAGCTCGCCACCGGCGCCAATGCACTG GACACCGCCAAGGCCATCCGCGCGACCGTTTCGTCGCTGGAGCCGTTCTTCCCGCCTGGCATGAAAGTCGTTTACCCGTATGACACCACACCGGTGGTCA GCGAATCGATCAACGGCGTGGTGCACACCCTGATCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCAACCATCAT CACCACGATGACGGTTCCGGTGGTCTTGCTGGGTACGTTCGGCATCCTCGCGGCCTTCGGCTTCACCATCAACACCCTGACCATGTTCGGTATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCGATTGTGGTGGTGGAAAACGTCGAGCGGGTCATGGAGGAGGAAAAACTCTCCCCACGCGACGCCACGATCAAAT CCATGACACAAATTCAGGGCGCGCTGGTCGGTATTGCCCTGGTGCTGTCGGCGGTTCTGTTGCCGATGGCGTTCTTCGGCGGCTCCACCGGGGTGATCTA CAAGCAGTTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTCGTGGTTGCGCTGATCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAACCCATC GATCACGAGAAGCACGGGCAACCGAAACGTGGTTTCTTCGGCTGGTTCAACCGCACCTTCGACCGCAGCGTTCTGAGTTACGAGCGCGGCGTCGGCAACA TGCTCAAGCACAAGTGGCCTGCGTACCTGGGTTACATACTGATCTGCGCGGGCATGGTGTTCATGTTCATGCGTATTCCGGCTGCGTTCCTGCCCGAAGA AGACCAGGGCGTTATCTTCGCCCAGATCCAGACACCGGCCGGCTCCTCGACCGAGCGCACGCAGGAAGTCATCGATCAGATGCGTGAGTACCTGCTGACC AAGGAAAGCGGCGCGGTGAAGTCGGTGTTCTCGGTAAACGGCTTCAACTTCGCGGGCCGCGGTCAAAGCTCGGCGATTGCGTTCGTGATGCTCAAGCCGT GGGAAGAACGTGATTCCGACAACAGCGTCTTCGAACTGGCCAAGCGGGCTCAGGGCTATTTCTTCAGCCTGCGCGACGCGATGGTGTTTGCCATCGTGCC GCCATCGGTATTGGAGCTGGGTAACGCAACGGGCTTCGACGTTTACCTGCAAGACCAAGGCGGCGTCGGTCACGAGAAACTGATGCAGGCGCGTAACCAG TTCCTCGGCATGGCCGCACAGAGCAAGATTCTGGCAGGCGTGCGTCCGAACGGTCTGAACGACGAACCGCAATACCAGTTGATCATCGACGACGAGCGCG CCAGCGCATTGGGTATCACCCTGTCGGACATCAACAACACCCTGTCCATCGCGTTGGGTGGCAGCTACGTCAACGACTTCATCGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGCGATGCAGGTGCGCGTATGACGCCTGAAGACCTGAAGAAATGGTACGTGCGAAACAGTGCGGGTGAAATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAATGGTCCTACGGCTCGCCGAAACTGTCACGCTACAACGGCGTGGCGGCAGAGGAAGTGCTCGGTACGCCAGCCCCTGGTTACA GCAGCGGCGACGCGATGAACGAAGTCGAGGCGCTGGCCAAGAAGCTGCCGCAGGGCATCGGCATCTCGTGGACCGGTCTGTCCTACGAGGAACGTCTGTC CGGTTCGCAGGCCCCTGCCCTGTATGCCCTGTCGTTGCTGGTCGTGTTCCTCTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATC CTCGTGGTGCCACTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGCGGTCTGTCCAACGACGTGTTCTTCCAGGTCGGACTGCTGGTGACGGTGG GTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAAGAGCTTCACGAACAGGGCAAGAGCCTGGTGGACGCGGCGATCGAGGCCTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCCATGGCCTTCATCCTCGGCGTCGTGCCGCTGGCGATTTCCTCGGGCGCAGGTTCGGGCAGTCAGCATTCGATC GGTACTGGCGTAATTGGCGGTATGATCACCGCAGTTATTCTGGCGATCTTCTGGGTGCCCCTGTTCTTCGTAACGGTTTCAGGGCTCTTCAAGAGCAAGC AGAAACATATTTCACACGATGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCATTGATCTCACTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGATTACAAGCAGCCGGAAGCACCGGTCGCCGCACAATA TCCGCAAGGGCCGGCGTACTCGCCGGTCGAAGGCGCCAAAATGGCCGCCGCGGAACAAGGCTGGCGGCACTTCTTCAATGACCCGGCGCTGCAACAGCTG ATTCAGACTGCACTGCTCAACAACCGTGACCTGCGGGTTGCGGCGCTGAACATCGACGCCTACCGCGCCCAGTACCGTATCCAGCGCTCGGACCTGTTCC CTGCTGTTTCGGCCACCGGCAGCGGTACACGTCAGCGCGTGCCAGCCGATCAGTCGCAAACCGGTCAATCAGGCATCACCAGCAGCTACTCGGCCTCTCT GGGTGTCAGCTCGTACGAGCTGGACCTCTTCGGCCGGGTCCGCAGCCTCAGCGAGCAGGCGCTGGAGACCTACTTCGCCAGCGAGGAAGCACGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVKDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDQMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDSDNSVFELAKRAQGYFFSLRDAMVFAIVPPSVLELGNATGFDVYLQDQGGVGHEKLMQARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMTPEDLKKWYVRNSAGEMVPFS AFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGDAMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSI GTGVIGGMITAVILAIFWVPLFFVTVSGLFKSKQKHISHDEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site