Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS19975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig50, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCACCGTTGGCCTGCAGCGTGCTCAGCAGGCCATTCTGCGAGAACTGCTTCATCTTCAGCGCGTATTCGATGGCTTCGCCGTCGCCGCCCAGTTGTGG CGCGTCCTCTGTGCCAGTGATCGGCAGGACTTCGATGTAGAGGTCGTCGGTCAGACGCTGATTCAGGCGCAACTCTTCTTCGCAGAAATGCTTGCGCAGG GCCAGCGTGGTGAAATCCAGAAAGCCGAAGTTCATCGGCTTTTTGAATTTGTAGGCATACGGACCCGTCAGCAGCACCCAGGAAATGTGCGTTTCGATGA CCTGGAAACTCTCCACCGGATGCGGGAAGAGGGCAGGGTTCTGCAGGGCAGCAATCAAAGACTGGCTCACGGTCGATCCTTCAGGAATGTGTTCAAAATG TAAGTACACGATGCCGCCATTATGGCCGCTTGGCGCGAGGCTGCAAACCGCTGACTCGGGCGTCTGTCGATCCTCGGTAAAGTGCGTATAATCCGCGCCC
|
|
| DNA Sequence for Gene |
>P406_RS19975
ATGACTCGATCCCGCACCTCTCGTTCTGCAAAAAAACAACCTCCCCGCAGCCTTAACAAGTGGCTGGGCTGGGCGTTGAAGCTCGGTATTGTCGGCCTGG TTCTGCTCGGCGGCCTGGCCATTTACCTCGATGCAATCGTCCAGGAAAAATTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTCTATGCACGGCCGCT GGAGCTGTTCGTCGGACAGAAGCTGAGCCGCGATGACTTTCTCATCGAACTGGACGCCCTGGGCTATCGCCGCGAAAGCGTGGCGAATGGTCCCGGTGCC GCAGCGGTGAACGGCAATACCGTCGACCTCAACACGCGTGGTTTTCAGTTCTACGAAGGTACTGACGCAGCGCAACAGGTGCGCGTGCGCTTTTCCGGTG ACTACGTAGCCGACCTGTCTTCGGGCAATGGTGCCAAGCTTGCGGTGGCACGGCTTGAGCCGTTGCTGATCGGCGGCCTGTACCCGAAGAATCTGGAAGA CCGGATCCTGATCAAGCTGGATCAGGCGCCGCCCTATCTGCTCGACGGGTTGGTAGCGGTCGAAGACCGGGATTTCTATCACCACTTCGGCGTGTCGCCC AAGTCCATTGCCCGGGCGATCTGGGTCAATACCTCGCAGGGGCAGATGCGTCAGGGCGGCAGTACGCTGACCCAGCAGTTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGTAAGCTGACCGAAGCCATGATGGCCATTTTGCTGGAGATCCATTACAGCAAGCAGGAAATCCTCGAGGCCTATCTCAA CGAAGTGTTCGTCGGTCAGGACGGCCAGCGAGCCGTTCACGGATTTGGTCTGGCCAGCCAGTATTTCTTCAGCCAGCCGCTGTCCGAACTGAAAATCCAT CAGGTGGCGATGCTGGTCGGTCTGGTCAAAGGACCGTCCTTCTATAATCCGCGGCGCAATCCGGAGCGTGCTCTGGAGCGTCGTAATCTGGTGCTCGACC TGTTCGAGCAGCAGGGCGTCGCCACGCCGGAAGTGGTTGCCGCTGCGAAGAAAATGCCACTGGGTGTGACCAAGACCGGGACCCTCGCCGACAGCTCGTT CCCGGCGTTCCTCGATCTGGTCAAGCGTCAGCTGCGCGAAGATTATCGCGACGAAGACTTGACCGAAGAAGGGCTGCGGATCTTTACCAGCTTCGATCCG ATCCTGCAGATGAAGTCCCAGGCTGCCATGGACGATACGTTCAAGAAGCTCGCCGGGCGCAAGGGCTCTGATGAAGTGGAGTCGGCCATGGTCGTCACCA ACCCGGAAACCGGCGAAGTGCAGGCGTTGATCGGTGGGCGTGAGGCCGGGTTCTCGGGCTTCAACCGGGCGATCGACGCGGTGCGGCCGATCGGCTCGCT GGTCAAGCCGGCTATCTACCTCACGGCACTCGAGCGGCCAAGCCAGTACACCTTGACCAGCTGGATCGCCGACGAACTGTTTCAGGTCAAAGGCGCCGAT GGCCAGATCTGGAAACCGCAGAACTACGATCGCAAGTCACACGGCAATATCTTCCTGTATCAGGGGCTGGCGCATTCTTACAACCTGTCGACCGCCAAGC TGGGTCTTGAGCTGGGCATTCCAAGCGTGTTCAAGACGCTGGCCAAACTGGGTGTGACGCGCGAGTGGCCTGCCTACCCGTCGATGCTGCTGGGTGCGGG TGGCTTGAGTCCGATGGAAGTGGCCACCATGTATCAGACCATCGCCAGCGGCGGGTTCAATACGCCGATGCGTGGTATTCGCAGCGTGCTCACCGCTGAA GGCGAGCCGCTCAAGCGTTATCCGTTCCAGATTGAACAGCGCTTCGATCCAGGTGCCATATACCTGGTGCAGAATGCGATGCAGCGGGTCATGCGCGAAG GGACGGGCAAATCTGTTTACAACGTGTTGCCGAGCTCGTTGAATCTGGCGGGCAAGACCGGCACCAGTAACGACTCGCGCGACAGCTGGTTTGCCGGGTT CAGCCAGGACCTGCTGGCCGTGGTGTGGATGGGCCGCGACGACAACGGCAAGACACCGTTTACCGGTGCCACCGGTGCCCTGCAGGTCTGGACCAGTTTC ATGCGCAAGGCCGGTCCGCTGCCGCTGGACATGGCGATGCCGGACAACGTCGTTCAGGCGTGGGTCGATGCGCAGACCGGCCAGGGTTCGGATGCAAGCT GCCCGAATGCCGTGCAGATGCCGTATATTCGCGGCAGTGAGCCCCAGCCCGGCGCGACATGCGGCGGCGCTCCGGCACCTGCCACTGAGGTGATGGACTG GGTCAAGGGTTGGTTGAACTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAATCGAGGTTTTGAAGTGAATAAATGGTGGATTCCAGCTTTAACGACACTGGCCTTGCTGAACGGCTGCGCCAGTGTGGAACGCGGCTCGATTCCGGT CGTGGATTCGAGCTCCAAGGTGTCCAGCGGCGAACGTGCGGCAGCTTCGCGTAACGGTACTTACCGCACCAACACCGCTCCGGTGCAACAGCAGCCGCAA GCTGTACCGCAGGACTCGGGCGTGGTGGTGATGGTACCGGGCGCGGGTGGCGCTGATGCAGGACAGAGCTACTCTGCGCCCGCCAGTCAGGCACCGTTCA GTGTCAACACTCCGCCTGTCGATGCGGCGCCGGTCAATCAGGCCCCGGTCAGTCAGGCTCCTGTGAACAACAGTTACAGCATGCCGGCTGCCTCTGCCCC GACCGGAATCCCGTCCAGCGGTGGCGGTCTGTCGGAGGACGAGCAGCTTGACGGGCCGGTACTGGCATTGCTGACCACCGCACAGCAACAACAGACCAGC
|
|
| Amino Acid Sequence |
>penicillin-binding protein
MTRSRTSRSAKKQPPRSLNKWLGWALKLGIVGLVLLGGLAIYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLSRDDFLIELDALGYRRESVANGPGA AAVNGNTVDLNTRGFQFYEGTDAAQQVRVRFSGDYVADLSSGNGAKLAVARLEPLLIGGLYPKNLEDRILIKLDQAPPYLLDGLVAVEDRDFYHHFGVSP KSIARAIWVNTSQGQMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAILLEIHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQYFFSQPLSELKIH QVAMLVGLVKGPSFYNPRRNPERALERRNLVLDLFEQQGVATPEVVAAAKKMPLGVTKTGTLADSSFPAFLDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKSQAAMDDTFKKLAGRKGSDEVESAMVVTNPETGEVQALIGGREAGFSGFNRAIDAVRPIGSLVKPAIYLTALERPSQYTLTSWIADELFQVKGAD GQIWKPQNYDRKSHGNIFLYQGLAHSYNLSTAKLGLELGIPSVFKTLAKLGVTREWPAYPSMLLGAGGLSPMEVATMYQTIASGGFNTPMRGIRSVLTAE GEPLKRYPFQIEQRFDPGAIYLVQNAMQRVMREGTGKSVYNVLPSSLNLAGKTGTSNDSRDSWFAGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MRKAGPLPLDMAMPDNVVQAWVDAQTGQGSDASCPNAVQMPYIRGSEPQPGATCGGAPAPATEVMDWVKGWLN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|