Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS18060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig43, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCGTGGTACTTTCTGTACTGCTGTTTTCTGTTGTCACTACGATGAAAAATTATCCCGCCAGTTCGACGGTAGTCAGTCCTTCCGGTCGGTATATTT TGGAGAACGTTAGGGTTGGGAGGATCCTCACGCTTGGTGGAATGGCTTACTTGAGAGTGATTGATAGGCAAAACCCACAAGAGGTTTACCGTACACCTCT GTACGACACTCAATCACTGGATATGAGGGTGACCGAAGATAACGAAACTGTCGGCATTGCCTGGATCTATTTCAATCGAGATAAAAAAACGTTCGACATC GCCATGCCCCAGTGGGAATCGCATTGGCTGAATATGTTTATCAGCAACACCCCTTATGTACACATTGAAAACTGAGCCTCCGCATGAGCCGTTGCGCCGG CCCAGGCCAACCTGCAGGTGCCATGCAACGGTCAAGTCGGACATCGGGCGAAATCTACAGGACAGTTTTTTCATGAGATCCAACACCAGGAAGGTACTCC
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| DNA Sequence for Gene |
>P406_RS18060
GTGTCCTTTAACCACTACTACCAAAGCGAACTCACTGCACTGCGCCAGCTTGGTCGTCGCTTCGCCGAGCGTAGTCCGGCGTTGGCGCCGTTTCTGGGGC AGGCCGGGCGGGATCCGGATGTGGAGCGGTTGCTCGAGGGCTTTGCGTTTCTGACCGGTCGGTTGCGTCAGAAGCTGGATGACGAGCTGCCGGAACTCAG CCATTCGCTGATGCACCTGCTGTGGCCCAATTACATGCGGCCGTTGCCGGCGTTCAGTATTTTGCAGTTTGATCCGTTGAAACGTTCGGGTCCTGCGCTG ACGGTCGAACGTGATACACCGGTCGATAGCAAGCCGATTAATGACGTGCGTTGTCGCTTCCGTACGTGCTACCCGACCGAAGTTCAGGCGCTGGATCTGA CCGCGCTGAATTACTCGGTGAAAGGCGGTGGTTCGTTGCTCAGCTTGCGCCTGGAGATGAGCGCTGAAGGTCACCTGGGTGAGCTTGAACTGAGCCGCCT GCGTTTGCATTTTGCAGGCGAGCGTTACATCAGCCAGATGCTGTATCTCTGCCTGCTACGCAATCTTGAGGGTATCGAGCTGATCCCGCTGGACGGTACT GGCAAGCCCATCAACGGTGTCAATGGGATGCCGATGGCGTTCACGATGCCGGGCGATCGCGTGCAGCCGGTAGGGTTTGCCGAAGAAGAAGCGCTGATCC CGTATCCGCTGAACACGTTTCGTGGCTATCGCTACCTGCAGGAGTACTTCGCGTTTCAGGACAAGTTCCTGTTCGTCGACATCAACGGTCTGGATCTGCT CAACGCGCTGCCAGAAGAGACACTCAAACAAGTGCGCGGTCTTGAGTTGCGCTTCGATATTCGCAAGAGCGGTATTCAGCGTCTTCGTCCCACCCTGGAT AACGTAAAGCTGCATTGCACGCCGATCGTCAACTTGTTCAAGCACGACGCCTTGCCGATTCGCCTTGATGGCAAGCAGGACGAGTACCTGCTGCTGCCAG CCGAATATAACCTGGAAACCTGTGGCGTCTTTTCGGTTGAGACCGTGACCGGTTGGAAGCCGGGAGGTCTTGGCTATCAGGATTATGTGCCGTTCGAATC CTTCGAGCACGACCCCAGTTTCGACGTGCCCAACAGCCGTCCGCATTACAGCATTCGCCAGCGTTCTTCTTTGCTGCATGAAGGCCTCGACACTTACCTG AGCTTCGGCATTCGCCACACAGAAGCGCACGAAACCCTGTCGATCGAGTTGATGTGCACCAACCAGAACCTGCCACGCAAACTCAAACTGGGCGACATCA ACGTGGCCTGCGAAGACACGCCGGAGTTTTTGAGTTTCCGCAATATCACACCCGCCACTTCCAGTTTCGCGCCCCCGCTGAACCGTGACTTCCTGTGGAA GTTGATCAGCAATATGTCGCTCAACTACTTGTCTCTGGCTGACGTCAATGCGCTGAAAGTGATTCTGGAAACGTACGATTTGCCCCGGTACTACGACCAG CACGCGGAAAAAGTCAGCAAGCGCCTGCTGGGCGGTTTGAAATCGATCAAGCATCGACACGTAGACAGACTGCACCGAGGGTTGCCGGTACGCGGGTTGC GCACTGAGCTGACCATCGACCCGGAAGGCTATATCGGTGAAGGCGATATGTTCGTATTCGCTTCGGTTCTCAACGAGTTTTTCGCGCTTTACGCCAGCCT CAATTCGTATCACGAACTGCGGGTAAAAAGCACACAGGGAGAAGTGTACCAATGGACACCACGTATGGGCCTCCAGCCCCTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCTGACCCTGGGTATACGCGAGTACTCGTTGTTTCAGGCCGTGCTGCTGGTCGTTGACCGGCTGCGCGATGTGCACCCGCACCTGAGCGAAGACGA CCTGTACGACCAGCTTGAATTTCAGGCCAACCCCAGCCTTGGCTTCCCGTCGAGTGACGTCAATCGCGTGGAGTTTTTCCACGAGCATGGGCAGATGCGC GCACGCATGCAGTTCAACCTGATCGGTCTGGTCGGTTCGGGTTCGCCACTGCCGGCGTTCTACGGTGAGCAGGCGCTGGGCGACAGCGAAGACGGCAACC CGACGCGCAACTTCCTCGACCTGTTCCATCACCGTTTGCAACGGCTGATGTTGCCGATCTGGAAGAAGTATCGCTACCGGGCCAGTTTTGAAAGCGGCGC GCTCGATCCGTTTTCCGCACAGCTGTTTGCCTTGATCGGCCTGGGCGGCGAAGAGATTCGACGTGCTCAGGAACTGAACTGGAAGCGTCTGCTGCCCTAC
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMHLLWPNYMRPLPAFSILQFDPLKRSGPAL TVERDTPVDSKPINDVRCRFRTCYPTEVQALDLTALNYSVKGGGSLLSLRLEMSAEGHLGELELSRLRLHFAGERYISQMLYLCLLRNLEGIELIPLDGT GKPINGVNGMPMAFTMPGDRVQPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDINGLDLLNALPEETLKQVRGLELRFDIRKSGIQRLRPTLD NVKLHCTPIVNLFKHDALPIRLDGKQDEYLLLPAEYNLETCGVFSVETVTGWKPGGLGYQDYVPFESFEHDPSFDVPNSRPHYSIRQRSSLLHEGLDTYL SFGIRHTEAHETLSIELMCTNQNLPRKLKLGDINVACEDTPEFLSFRNITPATSSFAPPLNRDFLWKLISNMSLNYLSLADVNALKVILETYDLPRYYDQ HAEKVSKRLLGGLKSIKHRHVDRLHRGLPVRGLRTELTIDPEGYIGEGDMFVFASVLNEFFALYASLNSYHELRVKSTQGEVYQWTPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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