Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS17995
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1029 | 1060 | 5.5E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 896 | 937 | 4.5E-9 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 406 | 439 | - |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1356 | 1388 | 7.0E-16 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1069 | 1106 | 7.3E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 643 | 684 | 0.0035 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 813 | 848 | 5.2E-6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 375 | 451 | - |
| PANTHER | PTHR32305 | - | - | - | 1355 | 1458 | 3.8E-40 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 751 | 780 | 1.6E-5 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 709 | 972 | 6.8E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1029 | 1060 | 2.6E-4 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 917 | 954 | 3.5E-5 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 804 | 979 | 1.3E-28 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1273 | 1305 | 1.2E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 751 | 782 | 4.0E-6 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1381 | 1457 | 2.9E-28 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 833 | 873 | 2.1E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1049 | 1079 | 2.5E-5 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 611 | 803 | 4.9E-18 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 1066 | 1456 | 9.5E-86 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 449 | 522 | 8.8E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.