Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS17105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACAACCTGCGTCAGAACTCGCGTGCACTGGGTCTGGGCGTACGTCGCCTGGGGATCTTCACCAGCATCGTGCTGTTCGACCAGCGTGTGTCGATGTGG ACCTCCATTCTCGGTCTGACCGTCGCCCTGATCGCCAGCTTCAAGTACGGCGGCGCGTTCCTGCTGATGTATCTGCTGTGGATCGGCATGACCCGCCTGA TCCTCACCCTGCTGCTGTCCCTGTCGGGACACAGGATCGGGCCTGCCTACCCGATCATTCTCTATTACAACCAGATCGTCGGCGCGCTGATGAAGATCTA TGTCTTCTTCCGCCTGGACCGCCAGTCCTGGACTCGCCAGGACACCAAACTAAGCCGCGACATGGCCAGCTTTCAGGGCTGGTTCAACACGTGGTCGTCC CGAACCATGACTTTCTCGGCTGGCACCATCTTCGTCGCTGTGCTGTTGACGATGGTTTGACCGGGCCAACGGATTAATTGCTTAAGTAGGAAAAATAGCC
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| DNA Sequence for Gene |
>P406_RS17105
ATGAATACAGCCGTGAATGCGAACGTCGTACATGAATCCGAAGCCCAGCGCCAACACGCGCGGATCAAGATCCCTGCCAAGCTGCGCCTGCTGAATGATC AGCCCAACGCGCCACTGGTACGTATCGAAGACCTGTCGGCCGGCGGCCTGAGTTTCGTTGCTCCGTCCGGGCAGAAATTCAGCGAAGGTCAGATCGTCAA GGGCCGCCTGCAATTCATCATCGACAACCTTGGCCTGGCCATGGACGTCGACCTGCAAGTGCGCTCGATCGACAACGCCAGCAACCGCATCGGTTGCCAG TTCCAGAACCTCGAACCTCAGGACATCGCTACCCTGCGCCACCTGATCACCTCGCACCTGTCCGGCGAAGTCGTCACCCTGGGCGAAGTGCTGGCCACCC TGCAGCGCGACAACTTCACCAAGGCACGCAAGGTCAAGGGCAAGGACGGCGGCATGAGCGCCATGGGTCGCCTGCGCGCTGTGACCTTCAGCCTGGGCGT GTTCATTGTCGGTCTGGCCGCTTTCGGTTTTATCTTCAAGACGATCTACGGCCTGTACTTCGTCAGCCATGCATCGGCTGGTTTGGTCACCATTCCAAGC ATGGACGTGACCATGCCGCGTGAAGGTACCGTGCAAAGCCTGGTCGCCCAGAACGGCGAAGCTGCCAAAGGCGCACCACTGGCGTCCTTCAACACCAGCA TGCTGGAAATGCTCAAGGGCAGCCTGACCGGTGAAGACCTGCAGCCAGCCAAGATCGAAGAGCTGTATGGCAAGCAGATGAGCGGCACCATGACCAGCCC GTGCGATTGCGTCGTGGCTCGCCAACTGGTGGCCGACGGTCAGTTCGCGTCCAAGGGTCAGGTGATCTTCCAACTGGTGCCACGCAACGCGCCGGCTACG GTTGAAGCGCGCTTCACTTATCGCCAGTTCAACGACGTCAAGCCAGGCACACGTGTCAGCTTCCAGATCGCTGGCGAAGACAAACTGCGTACCGGTCAGA TCGTCAGCAGCACCAACCTGAGCGACGCCGACCTGTCCACCGACATCCGCGTGCAGATCAAGCCTGACGAAAGCCTGAGCAGCTCGCTTGCCGGTCGCCC TGTCGAAGTGGTCAGCGATCGCGGCCCGTCCGTGAACTGGCTGATCGATAAAGCCATGGCTGCGGGTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATGAACAGCCCACTACGACGCCTGTCGACCCCCACGCTATTGAGCCTCGCCGTCGCGCTCGGCCTGAGCGGCTGTGCCGGCCTGCCTGATCAACGCCT TGCCAATGAAGCCCTGAAAAACGGCGACACGGCATTGGCGGAGCAGAACTATCGGCAGCTGGCGGACCTGGGCTATAGCGACGCGCAGGTCGGCCTGGCT GATATTCAGGTCGCGACTCGCGACCCGGCTCAGCTCAAGCAGGCCGAAGCGACCTATCGCGCTGCAGCAGAGACGTCGCCTCGTGCGCAGTCGCGTCTGG GCCGTCTGCTGGCGGCCAAGCCCGACGCGACCGAAGCCGAACACCGCGAAGCCGAAGGCCTGCTGAAAAAGGCCTTCGCCAATGGCGAATCCGGCACGCT GATCCCGCTGGCGATGCTGTATCTGCAATACCCGCACACCTTCCCTGAAGTGAATGCGCAGCAGAAGATCAGCGAGTGGCGCGCCGCCGGTTATCCGGAA
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| Amino Acid Sequence |
>hemolysin D
MNTAVNANVVHESEAQRQHARIKIPAKLRLLNDQPNAPLVRIEDLSAGGLSFVAPSGQKFSEGQIVKGRLQFIIDNLGLAMDVDLQVRSIDNASNRIGCQ FQNLEPQDIATLRHLITSHLSGEVVTLGEVLATLQRDNFTKARKVKGKDGGMSAMGRLRAVTFSLGVFIVGLAAFGFIFKTIYGLYFVSHASAGLVTIPS MDVTMPREGTVQSLVAQNGEAAKGAPLASFNTSMLEMLKGSLTGEDLQPAKIEELYGKQMSGTMTSPCDCVVARQLVADGQFASKGQVIFQLVPRNAPAT VEARFTYRQFNDVKPGTRVSFQIAGEDKLRTGQIVSSTNLSDADLSTDIRVQIKPDESLSSSLAGRPVEVVSDRGPSVNWLIDKAMAAGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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