Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS15480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. coryli str. NCPPB 4273 contig36, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCGACTACTTCGTCGCAGGCGACAAGCCGGCACGCGGCAAGCCGCTGCGCGAGATCAGCCACCAGGGTTGATCCGACGACCAGGCGTCCTCCCGGGACG CCTTTGGTTGTGCATGCTCCAGCGTGGAATGCATTTCCACACTGGAGCATTGACACGATCGTTACGAGATTCTCGTTCCTCACGCTCCAGATTCGGGGGC TTTCAGGACGATCCGGGGCTTTGTGGGAGCGAGCTGGGAGACGCTTCGCTTGCTCGCGAAGGCGTATTAACGGATCAACAGATTTTCAGCGGCTGCACCG GCCTCTTCGTGAGCAAGCTCACTCCCACGATTCGGGAATGCATTTCCCGACGCTCTGCGTCGCGATGGATGCGGAGCCTTGGCACGAGAGTCGACACGAT ACATATCCCCTCCCGACAGACGCGAATTGCCACTCCCCCTCCGCTCTGCCACAATCGCGAATGATTCTCTTTAGTTAGAACTTTCTCATCGAGGCCATTC
DNA Sequence for Gene
>P406_RS15480
GTGTCGTCAGTCCCAAGCACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGCGGCTGGCTGCTGGCCTGGCTCAGACGTAATGTCGCCTGCC CGCAACGTGCTCAGGATTTGAGTCAGGACACCTTCGTGCGTTTGCTGGGGCGCCATGAATTGCTTGCGCCCAGAGAACCGCGTGCTTTCCTGGCAACCGT CGCCAAAGGGTTGATGTTCGATCACTTCCGACGCGCTGCGCTGGAGCAGGCTTACCTCGGGGAGTTGATGCTGGTGCCTGAGGCCGAGCAGCCCTCTCCG GAAGAGCAGATGCTGATTGTGGAAGACCTCAAGGCCATCGACCGCATGCTAGGCACGCTGTCCAGCAAGGCGCGGGCGGCCTTTCTGTACAGTCGCCTCG ACGGCATGAGTCACTCCGAGATTGCCGAGAAGCTGGGCGTTTCGGTCTCGCGCGTCAGGCAATACCTGGCTCAGGCCATGCGTCAGTGCTACGTGGCACT TTACGGTGAGCCGACGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACACCAGACCGGTCTCTGCCCGTGTGCTCGATGCGGCCATCCAGTGGCAACTGAACATGGACAGCAACGGCGGCAATGACGCCGAACTGGCGCGCTGGCT GGCCGCCGACGAAGAGCATGCCCGGGCCTGGAGTCAGTTGGGCATGGTCAATCAGCGCTTTGCTTTGCCCGCAGGTCCGGCACGTAAGGCGTTGCAACAG TCACCGGGTGCCCTGCGACACAGTTTGCGCAAGCTGGGTGGCGGTCTGGCCGGAGTGTTCATGGCCTTGGGCCTGGCGTTGTTCGTCGGCGACCGCTATC TACCGATGGATTACTGGCTTGCCGACCAGCGCACGGCCACCGGTGAACAGCGCGACGTGCGTCTGGCGGACAACACCCTGATTCGTATGAACACCCACAG CGCAATCGATGTGCGCTTCGATGCGCAGCAACGTCGGGTCATTCTGCAGGACGGTGAAATACTGGTGCAGACCGGCGATCATGACGACCCGCGGCCCTTC
Amino Acid Sequence
>RNA polymerase sigma factor
MSSVPSTHSEIVGALYRDHRGWLLAWLRRNVACPQRAQDLSQDTFVRLLGRHELLAPREPRAFLATVAKGLMFDHFRRAALEQAYLGELMLVPEAEQPSP EEQMLIVEDLKAIDRMLGTLSSKARAAFLYSRLDGMSHSEIAEKLGVSVSRVRQYLAQAMRQCYVALYGEPT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site