Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS13640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig27, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGTTCCAGATTTCCGGCCAGCCGAATACCGTCAGTGCAGCCCCGGACAGGCGTCCGCGCGCGGCTTTCACCAGGTCGAACTGCCCCGAGCCGTCCTTG TCGGCTTCGTTGCCCTCGCTGCCGAATTTCATCGGCACGGTGATGTGGCTGTCGAAGGAAATGATCCGCTCCTGCAGGTCGTCGGCCTGTTGCATGACCT TGACCGGGTAGCCTGCCGGCGACCAGTAATTCCAGGCCAGAAAGCCCGTACCTGCACTAATGGCCAGGGCCAGCGGCAGGCCGATGAAGAGAGCTTTTTT CCAACGCGGTCTTGTCATTTCCGTCTCGTGTGGTTAACCGTTGCGCAGCCTGCTACGGCTGTTGCTATCTGGTGGAGAACGAGCGGATCGCCGATAAATT TAGCGCGGGGTCATGGATGTGGGTACAGCGCTAAATTTGTCTGCCGGGTTTACGTTCTAGCTTGGATAACGGCTGTCTCGGGGCTGGAACAGGTAGGGTA
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| DNA Sequence for Gene |
>P406_RS13640
ATGACGATTTCTCGACGAGGGTTCATAGCGGGTCTGGCGCTGACCGGTGCGGCAGTTCCGGCAGCGTATTACGCGCATCGGGAACTCACCCGGGTCGACC TGCCGGAAACGCCGGGCGAAGCCACGGCGGGGCCTGCCGATACCGCCACCCAGCGCCTGGCCGACAAGTTGCGCGGTGTGTGGACTCTGCGCTTTGAGGG GCGCGATGCCGGGCTGAGCGGTGCGCCGCTCGAAGGCCTGGAAATGTTTCTCGATATTGCCCCGCGCGGTCGCGGTCTGCGCGGCTATATCGACACGGCC GAGCAATTGCGCGGCGATGCGCTGCCGCGTTTTCGGGTGATTGGCGATCTGCAACCGGCCAACGCCGCAAGACTCTATCTGCGGGTCATGGACGGCCATG CCGGCAATGATCCGCACAGCGACAGCCCGGATTACGAATTCAGCCTGACCCTCGATGAAGTCTGGGGCGCGTTCGGTAACGCGGGCAGTGGCACCCTGAG CGGGCGTATCGAACGTCTGGACCGGCCGCTGGCTCTGCCGGAACTGGACAACCGTCTGATCGCGATCAAACAGGTGTTTCCAGAGGCGCGGGAAAGGGTT GGTCTGAGCCCGCCGTTTCTGGCCTGGCTGGTTTCCAGGGAGCATCGTCTGTTCCATCAGCTCTGGCATGCCTCGCGAGACAAATGGCACAAGTTGCCGG AAGACAAGCGTGACGCATTGCGCGGCATCGGCTGGCAGCCGGGGCCGCGTGATCATGAGCGCGATGCGCGTGGCCCGCACAAGGACCGCAATGGCTCGGG TGAAGACTTCTTTTATATGCACCGGCACATGCTGATCCAGGCACGCAGGATTCAGGACCTGCCGTCCTGGCCGCGTTTTCCGCTGCCGCAGCCTGAGCTG GAGCGCGACCGGCCGGGCTTTGCCCGCTATTTCGACAATTACGACGGTTGTTCGCTGCCGCCCAACTGGCTGGCGCACGGCGACGAGGAATACACCCAGC TGGTCAGCGATATCAAAAGCCATGAGACGTTTCATACGCATTTTCAGGTCTGGGAATCGCAGTATCGCGATCCGCGTTTTTTGTCGAAGCTGACCTTGGG CCAGTTTGGTTCGCAGGTCGAACTGGAACTGCACGACTGGCTGCACATGCGCTGGGCCTCGGTGGCCCGAGATCCGGCCAACGGCCAGCCGGTGCCGATG GCACGTCGTTCGGATGATTTTGCCGAGCGCTGGTTCGAGCCGGAAAACGACTTTCTTGCCGACCCGTTTTCATCGCACGTGAACCCGGTGTTCTGGATGT TCCATGGCTGGATTGACGACCGCATTGAGGACTGGTTCCGCGCCCACGAGCGCTTTCATCCGGGCGAAGTGAAGCGCCTGGAAGTCAACGGCGTGCCGTG GTTTGCGCCAGGCCGCTGGGTGAATGTCAGCGACCCCTGGCTGGGGCCGGACACCCACGGTTGCAGCACCGTACCGGGTCAGGCGGCGGGCACGACCATG GAAATGGACCCGGAAGTCATGAAGCTGGCGCTGCGCATCACCTTTGCGGCCGATGACAAACTGAGCAACTTGCTACGCCGCGTGCCGCGCCGGCCCTGGT ATGCACGGAATCTGCTGCCGGAGAGGTGGTTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGCGCTGGCCCCTAGGCTCTGTACGAAAAGTGGCTGCGCTCGGTGATGCTGCGTTAAAAACAGGCACGGATGCGAGTCCAATCGGAATGCTCATTTAC AACCCGTAGAGTCGAACGCGACCCCGGCCGTTCCTCGCCTGTTTTTGCCTTGCCTGACCTTCGCTCGCCGACTTTTCGTACAGAGCCTAACGCACTCCGC TCTGTCGGATATTTCATGAGTGACCCCCTGATTCTCGAACAAAAGGCGTAGGGTGGCGCCAGGTCGCAAGCTGTCTGGATGTTCGGCCGTTTCTCATCCC TTCCTTGCTTGCGCCCTCGAGAACACCTTTCATGACACCCGGAATTTTTGACGCGAACAACATTCACTTTGATCTGGGCCCCGATGCCGGTGGCAACTGG TCTGAGGTCATGCTGGAACATCACGGGCTTTACTGTGAGTTCGATAAAACCCTGTCAGGCAACTCCACAGCGCAAAGCTGGAGCCTGGGGGCTATCGGTG
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLALTGAAVPAAYYAHRELTRVDLPETPGEATAGPADTATQRLADKLRGVWTLRFEGRDAGLSGAPLEGLEMFLDIAPRGRGLRGYIDTA EQLRGDALPRFRVIGDLQPANAARLYLRVMDGHAGNDPHSDSPDYEFSLTLDEVWGAFGNAGSGTLSGRIERLDRPLALPELDNRLIAIKQVFPEARERV GLSPPFLAWLVSREHRLFHQLWHASRDKWHKLPEDKRDALRGIGWQPGPRDHERDARGPHKDRNGSGEDFFYMHRHMLIQARRIQDLPSWPRFPLPQPEL ERDRPGFARYFDNYDGCSLPPNWLAHGDEEYTQLVSDIKSHETFHTHFQVWESQYRDPRFLSKLTLGQFGSQVELELHDWLHMRWASVARDPANGQPVPM ARRSDDFAERWFEPENDFLADPFSSHVNPVFWMFHGWIDDRIEDWFRAHERFHPGEVKRLEVNGVPWFAPGRWVNVSDPWLGPDTHGCSTVPGQAAGTTM EMDPEVMKLALRITFAADDKLSNLLRRVPRRPWYARNLLPERWF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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