Pseudomonas syringae pv. coryli NCPPB 4273, P406_RS11895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. coryli str. NCPPB 4273 contig23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGCCACGTGAGGTTCACTGAGAATACTCAGCTGAACGAGCGGGTGCAGGCGCGCCAGTGCAGCCACATGTGGGGCCAGGAAATGTCTGGCTAGTATC GGCGGCGCAGTGATGGAGACCTTTGCTCTGACAGTTGTGCTGGAGGCCAGGCACCTGCGTTCAATGGCAAAAGACTTCGCTTCAATGTCCAGCGCATCCT GCAATATTTGTTGCCCTACCCCTGTCAGGCGGGACTCGCGCGCAAGTCTGTCCACCAGCCGAACATTCAGTGCTGCTCCAGCGAGGCCAGTCGACGACTG ACGGTAGCTTGGTTGACACCCAAGACACGCGCCGCGCCCTACAAACTGCCCGACCGCGCAATCGTCAGAAAAAATTGAAGATCTTCCCAGTTCATAAGCC ATGCAAATATGCATTGATGGTCAGCGGAGTTTAGTATTTACGCATTGACTGCCAACCGATACTTTCCATCCACTGCCTCAGCATTGTGACGATAGAAACC
|
|
| DNA Sequence for Gene |
>P406_RS11895
ATGTCAAAAACCTCATCCCTGGCTGCCATTCAGATCGCAGCCTGCCTCGGATTCCTCGTGGTCCAGCTTGATGTCAGCGTCGTAAACGTCGGGTTGGGCG CGCTGAAATCCGCTTTCGATACAAACCTCACGGGCCTGCAGTGGGTCATCAACAGTTACGCTCTGGCGTTCTCGGCACTGTTGATTCTTGGCGGTGCCTG GGGCGACACGTTCGGCGCCAGAACCGTATTCGCCTCGGGGTTTGCGATTTTCACGATTGCCTCCATCGGCTGTGGCCTGTCGAACAACATGAGCATGCTC ATCGGCATGCGGATCGTTCAGGGTGTCGGCGCGGCGTTGTTGGTCCCGACGTCCCTGACGCTCATACGGCTGACATTTGAAGACCCCGATAAACGCAGGT CTGCAGTCGCGATGTGGGGTGCCTGTGGAGGTATTGCCCTGGCTGCGGGCCCGGTGATGGGCGGCCTTTTGATCGAATACCTGGGCTGGCGCAGCGTTTT CTGGATCAACGTACCCATCGGGATTCTGGCGATCGGACTGGTCATGCATTACGCCCCGCCATCGCCGCGCATTGAACGGCAAGTGGATGTTCCGGGACAG ATCAGCATTGCCATGTGCCTGGCATCGCTAACCTACGGGCTGACCGAGCTGAGCGGACAGGGCTGGGGCATCGAGACTTTTTCGGCCATGGGACTTGCAG TGCTGTGCGCGATCGCATTTGTAATGATCGAGCGTCGGCTAAAACACCCATTGCTACCAAAACGGCTGGCCAGCAACCGGGTGTTGGCAACCACCGCTCT GGCCGGAGCCGCTATCAACCTCACGTTCTATGGGACGGTGTTCGTATTCAGCATCTACTTCCAGTCGTTTCTGCACTACGACGCCTTCAGAACGGGGATT GCGTTCATACCGCTAACGGCAGTGCTGACCGTCTCCACCATGATTTCGTCGCGTATAGCCAAACGGGTGGGTGCGACGCGGATCATTACCGCAGGCTTCC TGATTCAGGTACTGGGCTTTCTGGCGCTGTCCAGGGTCACACCCGATTCATCGTTGTTGTACTTGAACATTGCCTTGATGGTCGTGGGTATAGGCAGCGC CGCATCAGTGCCGTCCATCACCAACTCAATGTTGTCGTCTGTCTCCCGGGCCGATGCCGGCATGGCCTCCGGCCTGATGGCCTCTGCGCGGCAGCTGGGA GGAGTCGTCGGCGTGGCAGTGTTCGGAGCGATGATTACCAGCACCGAGCCCGCTGCGTTTTCTCACGGTTTGTCCAGGGCAATGATCGTTTGCGCACTGG CGCTGCTGTTCTGCCTTGCTGTGAGCCATTGGGTAACCCGCTCGTCCCGGCTACCCGTCGCTACGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATATCTCGGCGATTGATTCGTCCGTGGAACTTCAAGGTTCCCGCAACAACCACTGCCGCATCGCGGGAGCCACCACACCGCACAACCGCACACTATTAAT CAACGCTCCAGGAGTGCCCCATGAGCAAGCCCGACGTATCCATTGAAAACATAAGTTCCAAAGTCCGGATTGAGTATCCCGACTTTTCGACACTGCCTGA ACCGGTCAGGGAAAAGTTTGAAAGCCTGCCGACAAAAGTTAACTTCTTCCGGATGCTGGGTTACAGCGCAGGGGCATTTATACCGGTCATTGATCTGACC AACGCCATCTTCAGGGATCTGACGATCTCCGATTATCACAAGGAATTGTTGGTATTGCTGGTGGCTGCCCATGAAGACGTCGCTTACGAGTGGGAGCAGC ATGTTTCCATCGCTCAGGTGGCAGGCGTTCGGCCGGATCAGTTCGTCGCCATTGCAGAAGGCCGTCTCGATGATTCCGCCGCGCTCAAAGAAGACGAACG
|
|
| Amino Acid Sequence |
>MFS transporter
MSKTSSLAAIQIAACLGFLVVQLDVSVVNVGLGALKSAFDTNLTGLQWVINSYALAFSALLILGGAWGDTFGARTVFASGFAIFTIASIGCGLSNNMSML IGMRIVQGVGAALLVPTSLTLIRLTFEDPDKRRSAVAMWGACGGIALAAGPVMGGLLIEYLGWRSVFWINVPIGILAIGLVMHYAPPSPRIERQVDVPGQ ISIAMCLASLTYGLTELSGQGWGIETFSAMGLAVLCAIAFVMIERRLKHPLLPKRLASNRVLATTALAGAAINLTFYGTVFVFSIYFQSFLHYDAFRTGI AFIPLTAVLTVSTMISSRIAKRVGATRIITAGFLIQVLGFLALSRVTPDSSLLYLNIALMVVGIGSAASVPSITNSMLSSVSRADAGMASGLMASARQLG GVVGVAVFGAMITSTEPAAFSHGLSRAMIVCALALLFCLAVSHWVTRSSRLPVAT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|