Pseudomonas syringae pv. tomato NYS-T1, NB04_RS25375 (proY)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTCCGGCTTCATGATCGCGCAGGTCACGGCCGCCGCGCTGGCCAGTGAAAACAAGGCATTGGCCCATCCGCACAGTGTCGACAGCCTGCCGACCTCCGC CAATCAGGAAGACCACGTGTCGATGGCACCGGCTGCTGGCAAGCGGTTATGGGAAATGGCAGAAAACGTTCGCGGGATTCTTGCCGTAGAATGGTTGGCT GCCTGCCAGGGGCTGGACTTGCGTGAAGGCCTGAAAACCTCCGCGAAGCTGGAGCAAGCCCGCAGCCTGTTGCGCAGCAAGGTCCCGTTCTATGAAAAGG ACCGCTTTTTTGCACCGGACATCGAAGCTGCCAGTCAGCTGTTGTCCTCCACTTGCCTGAACCCGCTGGTTCCTGCACGTCTGCTACCGAGTCTGTGATG CACCGCGAGCCTGGCAGGGCTCGCTTTGGTCATCGCTGCGGGAAGCCGGATGCAGGCGTCCTCGCGGCTTTTGCCATACCTGTAATGAAATGGACCTGAA
|
|
| DNA Sequence for Gene |
>NB04_RS25375
|proY
ATGACGTCACAAGATGGTTTGAAACGCGGGTTATCCGCCCGCCACATCCGCTTCATGGCCCTGGGCTCTGCCATCGGCACAGGGTTGTTCTACGGCTCGG CCTCGGCGATTCAACAGGCCGGTCCCGCGGTACTGCTGGCCTACCTGATCGGCGGCGCGGCGGTGTACATGGTGATGCGCGCACTCGGCGAAATGGCCGT TCACGACCCGGTGTCCGGTTCGTTCAGCCATTACGCCACGCGCTACATGGGGCCGCTGGCCGGTTTCGTGCTGGGCTGGACCTACGCGTTCGAGATGATC ATCGTCTGTTTGGCCGATGTGACAGCCTTCGGCATTTACATGGGCTTCTGGTTTCCGGAAGTGCCGCGCTGGATCTGGGTGCTGGGCATCGTGTTCCTGA TCGGCGCGCTCAACCTGTGCAACGTCAAAGTTTTCGGCGAAACCGAATTCTGGCTGTCGATCCTCAAGGTCAGCGCCATCGTGGCGATGATCGTTGCAGG CTTCGGCATCATGATCTTCGGCATCGGCAGCTCGACCAGCGGCACTGAAATCGGCATCAGCAACCTGTGGGCGCATGGCGGCTTCATGCCCAACGGCGTC ACCGGCCTGATCGCTTCGTTTGCAGTGGTGATGTTTGCTTTCGGCGGCATCGAGATCATCGGCATCACGGCCGGTGAGGCAAAGGACCCGCAACGCAGCC TGCCGCAGGCAATCAACGCGGTGCCGCTGCGTATTCTGCTGTTCTACGTGCTGACCCTGTTTGTGCTGATGTGTATTTATCCGTGGCCGCAAATCGGCAC CCAAGGCAGCCCGTTCGTACAGATTTTCGACAACTTGGGCATTGCCTCGGCGGCGACCATTCTCAACATCGTGGTGATCTCGGCGGCGGTGTCAGCTATC AACAGCGACATCTTCGGCGCAGGCCGCATGATGTACGGCCTGGCCCGCGACGGTCAGGCGCCGGCGAGTTTTGCTCGCCTGTCGCGTCAGGGCGTGCCGT GGATGACCGTGCTGGTAATGGGCGTGACGCTGCTCGGTGGCGTGCTGCTCAACTACCTGATCCCCAAAGACGTGTTCCTGCTGATCGCGTCGCTGGCAAC CTTCGCCACGGTCTGGGTCTGGCTGATGATCCTGCTGACTCAGGTCGCCATGCGCCGCTCGATGAGCCGCGAAGAGGTCACACAGCTCAAGTTTGCGGTG CCGTTCTGGCCTTACGGGCCTGCCGCCGCCATTGCCTTCATGCTGTTCATCTTCGGCGTTCTGGGCTATTTCCCGGACAACCGTGCAGCCTTGATCGTCG GCGCAATCTGGATTGTGCTGCTGCTCATCGCCTACGGGTTGTGGGTCAAGCCAAAGGCGCTCAACAAAACCCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCAAAGAGGCCCGGAATGAAAACGCTCTGGAAACACTGTCACATCGCAAGCATGGCACACGGCAAATACTCGATCATCGAGAACGCCGCCATCGTGACCT CCGGGGCGCTCATCGAGTGGATCGGGCCTCAGGCTGATCTGATCGAGCCGGAACATGACAACTGCATCGATCTGGGCGGCGCGTGGGTGACGCCCGGCCT GATCGACTGCCACACGCACACGGTGTTTGGCGGCAACCGCAGCGGCGAGTTCGAGCAGCGTTTGCAGGGTGTGAGTTATGCCGAAATTGCCGCAGCAGGT GGTGGTATCGCCAGCACGGTGCGCGCGACCCGTGCCGCCAGTGAAGATGAACTGTACGCCAGCGCCGAGCGTCGTCTGCGGCATTTGCTTAAGGACGGCG TCACCACCGTCGAGATGAAATCGGGCTACGGGCTGGACCTGGAAAACGAGCGCAAGATCCTCCGCGTGATCCGCCGTCTGGGCAATACCCAGCCGGTCAC
|
|
| Amino Acid Sequence |
>permease
MTSQDGLKRGLSARHIRFMALGSAIGTGLFYGSASAIQQAGPAVLLAYLIGGAAVYMVMRALGEMAVHDPVSGSFSHYATRYMGPLAGFVLGWTYAFEMI IVCLADVTAFGIYMGFWFPEVPRWIWVLGIVFLIGALNLCNVKVFGETEFWLSILKVSAIVAMIVAGFGIMIFGIGSSTSGTEIGISNLWAHGGFMPNGV TGLIASFAVVMFAFGGIEIIGITAGEAKDPQRSLPQAINAVPLRILLFYVLTLFVLMCIYPWPQIGTQGSPFVQIFDNLGIASAATILNIVVISAAVSAI NSDIFGAGRMMYGLARDGQAPASFARLSRQGVPWMTVLVMGVTLLGGVLLNYLIPKDVFLLIASLATFATVWVWLMILLTQVAMRRSMSREEVTQLKFAV PFWPYGPAAAIAFMLFIFGVLGYFPDNRAALIVGAIWIVLLLIAYGLWVKPKALNKTH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|