Pseudomonas syringae pv. tomato NYS-T1, NB04_RS25230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCGCCGGTGGCCGTGGCGAAGCGCGTCCGCTGAGTGACAAGGACCGCTGGATCGCCGAACAGATCGGCCCGACCCTGCGCGAAAAAGGCCTGCTGTT CGTCGGCCTCGACGTGATCGGTGAGCACCTGACCGAAATCAACGTCACCAGCCCGACCTGCATCCGCGAAATCGACAACGCTTTCGGCACCAATATCGGT GGCCTGTTGATGGATGCGATCGAGAAGAAGCTGCAGGCGCGCAAGGGCTAAGGTCCCCCGGAGATGGGGCTTTTTGTGAGAGCGGACCGGGCGACGCTTC GCTCCCACAAAGGCTCGCGTTTTCGTGTATTTCAAGCGTTATGTACAACGACGAGCGCCGCCGGCTATGGGGCAAACCCTATGCCACGGCGCCCCTTCGT CCGATCCGCAGCCAGGTTGCACCGTACATTGCGTTATCATGCGCCACCTGTAACACGACACGGATTTTGACATGCAGGCTGACGAGACACTGAACCGCTG
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| DNA Sequence for Gene |
>NB04_RS25230
ATGACATCCATGGCCAGAAACGACCTGCCCCTCGAACTCGCCAATGTGGGTGTGCGTCCTGCCGATCGGCTGGGCTTTACCATAATGATCGCTGCGCTGA TCCACCTCGCGGTGATCCTTGGCGTGGGCTTCACCTATGTGAAGCCGGAACAGATCTCGCAGACCCTGGAAATCACCCTCGCCACATTTAAGAGCGAAGA AAAGCCCAAACAGGCCGACTTTCTGGCCCAGGACGATCAACAAGGCAGCGGCACGCTGGACAAGGCCGAAACGCTGAAGACCACCGAGCTTGCGCCGTAT CAGGACACCAAGGTCAATAAAGTCACGCCGCCACCGTCCAGCAAGCCGGTGGTCAAGCAGGAAGCGCCCAAGACAGCCGTCGCGACCACTGCGGCCAGCC CGCAGAAAACCGTCGCCAAGCGCGACGAAGTCAAGCCCGAGCCCACTACCAAGGCCGCGCCGACCTTTGACAGTTCGGACCTGAGCAACGAAATCGCCAG CCTGGAAGCCGAACTCTCGACCGAACAGCAGCTGTACGCCAAGCGCCCCAAGATCCACCGCCTCAACGCCGCCTCGACCATGCGCGACAAAGGTGCCTGG TACAAGGACGACTGGCGCAAGAAGGTCGAGCGAGTCGGTAACCTGAACTATCCTGAGGAAGCTCGCCGCAAGCAGATTTACGGCAATTTGCGACTTCTTG TGTCGATCAATCGGGATGGGTCGTTGTACGAAGTGCTGGTGCTGGAATCATCAGGGCAACCGTTGCTGGACCAGGCCGCACAGCGGATCGTGCGTCTTGC TGCGCCTTTTGCGCCGTTCACCGGCGATCTGGCAGACATCGACCGGCTAGAGATCATCCGCACCTGGAAATTCGCACGCGGCGACAAGCTGTCCAGCAAC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATTTTTGCCAACGGACACTCGACATGTATAAGTGCCAGTTGTCAGGTCTGTAACACGACGCCACACTAGGACTCATGAAAAAAGTCTCTCCGAGTTATC TCAAGCATCAGTTCCTGATCGCCATGCCCCACATGCACGACGAGAACTTTGCGCAGACCTTGACCTACGTCGTTGAGCACAACGCCAATGGCGCGATGGG GCTGGTGATCAACCGCCCGCAAAGCCTGACCCTGGCGGATGTGCTCGAGCAACTGCGACCGGAACTGCCTGCACCAAAACGCTGCCAGGAAATCGCCATC CATGCTGGCGGCCCGGTGCAGACCGACCGTGGGTTTGTCCTGCACCCCAGCGGCCAGACCTTTCAGGCCACCGTCGATCTACCCGGCGGGATTTCGCTGT CGACGTCACAGGACGTGTTGTTTTCCATCGCCGACGGCTACGGGCCTGATCAAAATGTGATCACCCTCGGTTACGCGGGATGGGACGCTGGCCAGCTGGA
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| Amino Acid Sequence |
>cell envelope biogenesis protein TonB
MTSMARNDLPLELANVGVRPADRLGFTIMIAALIHLAVILGVGFTYVKPEQISQTLEITLATFKSEEKPKQADFLAQDDQQGSGTLDKAETLKTTELAPY QDTKVNKVTPPPSSKPVVKQEAPKTAVATTAASPQKTVAKRDEVKPEPTTKAAPTFDSSDLSNEIASLEAELSTEQQLYAKRPKIHRLNAASTMRDKGAW YKDDWRKKVERVGNLNYPEEARRKQIYGNLRLLVSINRDGSLYEVLVLESSGQPLLDQAAQRIVRLAAPFAPFTGDLADIDRLEIIRTWKFARGDKLSSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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