Pseudomonas syringae pv. tomato NYS-T1, NB04_RS23615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0033856 | pyridoxine 5'-phosphate synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0008615 | pyridoxine biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF03740 | Pyridoxal phosphate biosynthesis protein PdxJ | IPR004569 | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | 9 | 241 | 1.6E-99 |
| Coils | Coil | Coil | - | - | 242 | 246 | - |
| Hamap | MF_00279 | Pyridoxine 5'-phosphate synthase [pdxJ]. | IPR004569 | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | 1 | 246 | 122.94873 |
| PANTHER | PTHR30456 | PYRIDOXINE 5'-PHOSPHATE SYNTHASE | IPR004569 | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | 7 | 244 | 1.1E-102 |
| FunFam | G3DSA:3.20.20.70:FF:000042 | Pyridoxine 5'-phosphate synthase | - | - | 4 | 246 | 1.8E-120 |
| SUPERFAMILY | SSF63892 | Pyridoxine 5'-phosphate synthase | IPR036130 | Pyridoxine 5'-phosphate synthase | 7 | 242 | 2.35E-94 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 1 | 246 | 2.4E-112 |
| NCBIfam | TIGR00559 | JCVI: pyridoxine 5'-phosphate synthase | IPR004569 | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | 9 | 241 | 1.9E-94 |
| CDD | cd00003 | PNPsynthase | IPR004569 | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | 8 | 241 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.