Pseudomonas syringae pv. tomato NYS-T1, NB04_RS23390 (obgE)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGACTCATGGCTCACAAAAAAGCTGGTGGTAGTACCCGTAACGGGCGCGACTCAGAAGCCAAACGCCTTGGCGTGAAGATGTATGGCGGCCAGGCTAT CATCCCTGGCAACATCATCGTGCGTCAGCGCGGCACCCAATTCCACGCTGGCTACGGCGTTGGCATGGGTAAAGATCACACCCTGTTCGCGAAAGTGGAA GGCGTGATCAAGTTTCAAGTCAAGGGCGCCTTCGGTCGTCGCTACGTGAGCATCGTTCCGAAGACTGAAGTCTCCGCGGCGTAATCACGCAGTTGCTTAA AAGCCCTGTCTTGCGACGGGGCTTTTTTGTTTGTAGAGGTAGAGAGGCAGGTGAGTCTCTTGCAAAACTGTTTGTGCGGGCTGTTGTGATGTTGACCCTT GGGGTCGCTGGTTTCTGATCGGTATCGCAACGCTCATTTTTGCAAGAGTCTTATGTAATTTATGTGGTTCTGCTCGTCCCTGTGGCGGGAGGCGTGCGTT
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| DNA Sequence for Gene |
>NB04_RS23390
|obgE
ATGAAATTTGTAGATGAAGTTTCCATTCGAGTAAAAGCCGGTGACGGCGGCAACGGTTGCATGAGCTTCCGTCGCGAAAAATTCATTGAAAACGGTGGTC CAAACGGCGGCGACGGTGGCGATGGCGGTTCGGTCTTTATGATCGCCGACGTCAACCTGAACACGTTGGTCGACTACCGCTACACCCGACACTTCGATGC CGAGCGCGGCGCCAATGGCGGCAGCGCCGATTGCACCGGTCGTAAAGGTGAAGAGTTGGTGCTGCGTGTGCCGGTGGGCACCACCATCATTGACGCCACC ACCCAGGAAATCATCGGTGACCTGACCAAAGACGGTCAGCGCCTGATGGTTGCACAAGGCGGCTGGCACGGTCTGGGTAACACCCGATTCAAATCCAGTA CCAACCGTGCGCCACGTCAGACCAGCCCGGGCAAGCCAGGTGATCAGCGTGATCTCAAGCTTGAGCTGAAAGTGCTGGCCGACGTTGGCCTGCTGGGCTT GCCGAATGCCGGCAAGAGCACGTTCATTCGTTCGGTATCGGCTGCCAAGCCGAAAGTTGCCGATTATCCGTTCACCACGCTGGTGCCAAACCTGGGCGTG GTCAGTGTCGATCGCTGGAAGAGCTTTGTCGTCGCCGACATTCCGGGCTTGATCGAAGGTGCATCCGACGGTGCCGGTCTGGGGATTCGCTTCCTCAAGC ACTTGGCGCGTACCCGTCTGCTGCTGCACCTGGTCGATATGGCGCCTCTGGATGAAACCAGTGCCCCGGATGCTGCAGAAGTGATCGTCAGCGAGCTGGA AAAATTCAGCCCGTCGCTGGCAGAGCGTGATCGCTGGCTGGTGCTGAACAAGTGCGACCAGATCCTTGAAGAGGAGCAGGAAGCCCGCAAGCAGGAGATC GTTGATCGCCTGGGATGGACCGGCCCTGTCTACGTGATCTCTGCCATTGCCAAAGAAGGCACCGAGCAGCTGACTCGCGACATCATGCGTTACCTCGAAG AGCGCAGTCTGCGCATCGCCGAAGAGCCTGGTTACGCCGAAGAGCTGGCCGAGCTCGATCAGCGCATCGAAGACGAAGCGCGCGCGCAGTTGCAGGCCCT GGACGATCAGCGTGCCCTGCGTCGCAGTGGCGTGAAGAGCGTGCATGACATCGGTGAAGATGACTGGGACGAAGAAGATGTGGATGATGAAGACGGTCCG GAAATCATTTACGTCCGCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCTTGAAGTAAACTTGAACGCCGCTACGATTGTTAGCGGCGTTTTTGTATCTTGAATTTGAAAACTCTCTGGCTAAGGTTGGAAGAAGATGCGCAGCA AAGTGACGGGCGCCCAGCGCTGGGTTGTGAAGATTGGCAGTGCCTTGCTGACCGCGGATGGCAAGGGCCTGGATCGCAACGCCATGGGTGTGTGGGTAGA GCAGATGGTGGCGCTGCATGAAGCAGGCGTCGAGCTGGTGCTGGTTTCTTCCGGGGCTGTTGCTGCCGGTATGAGTCGCCTTGGCTGGACGGCGCGACCC AGTGCAATGCACGAGCTTCAGGCTGCCGCTGCAATCGGTCAGATGGGGCTGGTGCAGGCGTGGGAGTCGAGTTTTGCCGAGCATGGCCGGCATACCGCAC AGATCCTGCTGACCCACGACGACCTGTCGGACCGCAAACGCTACCTGAATGCCCGTAGCACCCTGCGTACGCTGGTCGAGCTTGGGGTGGTGCCGGTCAT
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| Amino Acid Sequence |
>GTPase CgtA
MKFVDEVSIRVKAGDGGNGCMSFRREKFIENGGPNGGDGGDGGSVFMIADVNLNTLVDYRYTRHFDAERGANGGSADCTGRKGEELVLRVPVGTTIIDAT TQEIIGDLTKDGQRLMVAQGGWHGLGNTRFKSSTNRAPRQTSPGKPGDQRDLKLELKVLADVGLLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPNLGV VSVDRWKSFVVADIPGLIEGASDGAGLGIRFLKHLARTRLLLHLVDMAPLDETSAPDAAEVIVSELEKFSPSLAERDRWLVLNKCDQILEEEQEARKQEI VDRLGWTGPVYVISAIAKEGTEQLTRDIMRYLEERSLRIAEEPGYAEELAELDQRIEDEARAQLQALDDQRALRRSGVKSVHDIGEDDWDEEDVDDEDGP EIIYVRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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