Pseudomonas syringae pv. tomato NYS-T1, NB04_RS22155

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 9 126 5.89E-19
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 366 546 9.1E-44
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 710 724 1.5E-32
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 552 769 1.9E-78
Coils Coil Coil - - 434 454 -
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 599 759 4.8E-10
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 598 765 6.0E-42
Gene3D G3DSA:1.10.8.60 - - - 772 864 2.6E-9
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 648 666 1.5E-32
Coils Coil Coil - - 465 485 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 181 498 4.38E-70
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 677 695 1.5E-32
CDD cd00009 AAA - - 204 363 1.58489E-14
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 603 621 1.5E-32
Pfam PF02861 Clp amino terminal domain, pathogenicity island component IPR004176 Clp, repeat (R) domain 103 126 1.9
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 172 364 5.8E-70
Pfam PF02861 Clp amino terminal domain, pathogenicity island component IPR004176 Clp, repeat (R) domain 21 73 1.1E-4
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 14 846 0.0
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 775 845 3.4E-12
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 548 843 3.35E-64
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 158 2.5E-41
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 225 338 7.9E-9
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 365 463 5.0E-30
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 771 864 2.3E-8
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 568 769 1.97317E-77
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 552 769 2.3E-68
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 10 855 0.0
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 220 365 1.5E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.