Pseudomonas syringae pv. tomato NYS-T1, NB04_RS20460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig19, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTACGCCAGTAAGCCACGCATGACCTCTGCCGCTGCAGCAATCAACACTCGATTGGCTGCCAGGGTTGCCTCCAGATCAGCGGGATTAACAAAGCGGTAT TCCCCGTCTTTAGGGTCCAGCCCTGCACTGACGCTGCGGTGCCAGGAGTCCCAAATCACCTGTCGCACCCCAACAGGTTGTTCGGTGCATCCGCTCAGGC AAGCCAGCCAGGCGTTCTCCAGCGCCGCAATCGGCCCTTCGCTCAGCGAGGTCGGGTCTAGCGCAGTGAGGTAATCAAGGTCTTGTACGCTGAAAGCCAT TGGCTGCGGGGTCATGTGCTACCCATATGTTCATACTTTTGACATGTCATTATAGGCATGTCATCAGAATGAACACTTATTTCAGACTTATTTTATTATT CTCTTAATTATCAATGGTTTGAATATTGGCACAGGCTTTGCTCTTTCCCTTGCAGCATTAGTAACGCTTCTACTGAACAACAATAAAAAGGAGTCATTTC
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| DNA Sequence for Gene |
>NB04_RS20460
ATGAGTGCATCCAAGACCCTTCGCCTTGGCCTCATCGGCGCTGGCCGTATGGGCAGTTTCCACGGCCAGACTGCCGCCCTGCGTATCCCTGGTGCCTGCC TGGCGGCCATCGCAGACCCGACACCTGGCCAGGCCGCTCGCCTCGCTACCGAACTTGGCGTAGAGCGGTTTTACACTGACCCGCAGCAATTGCTCGACGA CCCGGATATCGACGGCGTACTGATCGCCGCCCCGGCCCGCAGCCATGCCGAGTTAGTGATCAGCGCGGCCCGGGCAGGCAAAGGTGTGTTTTGTGAGAAA CCCATGGCTATCACACTGGACGAAGCCGACCGCGCTATCGCGGCCGCAGCCGATGCGCAAGTGACGCTGCAAGTCGGCTTCAACCGTCGCTTTGCGAAAA GCTTCCGCACTGCCCACCTGGACGTGGTTGCCGGGCGGATCGGCACGCCGCAACTGCTGCGCTCTCTGACGCGCGATCCGGCCTTGAACAATCCCGCCGC CTCGCCGCAGTGGGTGATTTTCCTCGAGACCTTGATCCATGACTTCGATAGCCTGCGCTACCTCAACCCCGGTGCCGAAGCCGTCGAAGTGTTCGTGATG GCCGATGCTCTCATTGCACCGGACTACAAGAGTAAGGGGTTTCTCGACACCGCGGTGGTCACGATCCGTTTCGACAACGGCGCTATCGCCACGGCCGAAG CGAATTTCCAGGCGGTCTATGGCTACGATGTCCGAGGCGAAGTCTTCGGCAGCGCGGGCATGCTGACCATGGGCAGCGTCAATGACTCTGACCTGGTTCG CTATCTGGCCAACGGCATCCAGAGCGACACCCAGCGCCTGGACACTGACCTGCTGCGTGATGCGTATGTGGCCGAACTCAACCACTTTGCAGACTGCCTG CGTACCGGCGCAAAACCACTCGCCAGCGGCGAAGATGCCCGGGCAGCACTGGCAATCGCCCGCGCGTGCATCGAGTCGTTCCAACTAGGTAAAGCGGTGC GCGTCGAGGGAGCCCGCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTCACGCCGTTCAAACTGGCCGTCAGTGCCGAAATGGTCTTTCTCGATCTGCCATTCACTGAGCGCGTCAAACGCATCCATGCGCTGGGTTTCAGCGC CGAGATCTGGGGCTGGACGAGCAAGGACATTGCCGCACTCGCTGCAACCGGCGCGGACTTCACCTCAATGACCGGCTACATCCGGGGCAACTTGACCGAC GCCGAAGACAGCCGGCAACTACTCGACAGTGCGCGGGAATCACTGGCCATCGCCGCACAACTCAATTGCCCAAGCCTCAACCTGCATGGCACTGGCCTGG ACGATCAGGGCTTGCCGGTCAAACCCGTGGCCCACGCTAACGGGCGCATGTGGTTGAGTGCCTGCAAGACCCTGGAAAAAATCGCTCGCCTGGGCGAAGA CGCCGGTCGTGTGTTTCTGCTGGAAAACCTCAATACTGAAGTGGACCATCCTGGCACACCATTCGCTCGCGCCGACGATACCCTGGCGCTGATCGAGGCC
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| Amino Acid Sequence |
>dehydrogenase
MSASKTLRLGLIGAGRMGSFHGQTAALRIPGACLAAIADPTPGQAARLATELGVERFYTDPQQLLDDPDIDGVLIAAPARSHAELVISAARAGKGVFCEK PMAITLDEADRAIAAAADAQVTLQVGFNRRFAKSFRTAHLDVVAGRIGTPQLLRSLTRDPALNNPAASPQWVIFLETLIHDFDSLRYLNPGAEAVEVFVM ADALIAPDYKSKGFLDTAVVTIRFDNGAIATAEANFQAVYGYDVRGEVFGSAGMLTMGSVNDSDLVRYLANGIQSDTQRLDTDLLRDAYVAELNHFADCL RTGAKPLASGEDARAALAIARACIESFQLGKAVRVEGARS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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