Pseudomonas syringae pv. tomato NYS-T1, NB04_RS20430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGACCACCGGGCACGGTGGTTACAGACAGTTGCGTTCGATCAAAGTTCCGCGAACGACAATCAATATCGTTTTATACAGGATAAATGTGTGAGCGACGC GGACTTAACATTTCTTTACGCTGACGAGCAGTCACCTGCCGAAAGACGACGTGCTGCTCTTTACCTGACGATGGCGCAAATACCGGAGGGTAAAGTGGTC GCCTACGGGCAACTGGCCGAACTGGCTGGGCTGGGAAAAGCGGCGCGCTGGGTGGGCCGTACCTTGAGTCAGTTACCACAAGGATCGTCCCTGCCGTGGC ACCGCGTGCTGGGGGCCGGCGGGCGGCTCAGTCTGCCAGTGGGTAGCGCGTCGGGCGACGAACAGCGGGCCCGTTTGCGTGCCGAGGGCGTCACGATTCT GAACAATCGGGTTGATATGCAGCGTCATGGCTGGCGTCCCCTATAGCACAGCGGTTAGAGTGCGCCCTTTGTTTTCGTAACCTGAGGCAGATTCCAGCCC
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| DNA Sequence for Gene |
>NB04_RS20430
ATGCCCCGTAAAACCTGGCGCGCCGCGCTCGCCGCATATGCCAGCCCGTCGACATTAGTGTTACTGCTGCTCGGATTCGCTGCGGGCATGCCTTACATGC TCGTCTTCTCGACATTATCCGTGTGGCTGCGCGAAGCCGGTGTGGCTCGCGAGACCATCGGCTATGCGAGCCTGATCGGCCTTGCCTACGCCTTCAAATG GGTCTGGTCGCCATTACTCGACCAATGGCGCCTGCCTTTTCTCGGCAAGCTGGGGCGTCGCCGCTCCTGGCTGGTGCTTGCACAGAGCCTGGTGATCCTT GGCCTCATCGGCATGGGTTTCTGCGATCCGCAGAAACACCTGTCCTGGCTGATCGCAATTGCCGTGGTGGTGGCCTTCGCCTCCGCGACGCAAGACATCG CCATCGACGCCTATCGCCTGGAAATCGCCCAGGACACCCAGCAGGCCGCCCTCGCCGCCAGTTACATGTCCGGCTATCGGGTCGCCGCACTGTTGGCGAC CGCAGGCGCGCTGTACTTCGCAGAAGGTTTCGGTTCGACAGGTTTTGCCTACAAGCATGCCGCATGGACCGGCACGTACGTGCTGTTCGGCCTGCTGATG CTGCCGGCGCTCGTCACCACGCTGATCATGCGCGAGCCGCCGGTGCCGCTGCGTACGCAATTGTCGGCCGCGCGTTATGGCTTCACTCACCAACTGGCCT CGGTGTTTGTGCTGATCGTGCTACTGGTTTCAGTACCGGCGATGTTTACCCAGCTTTACAACACCGACTTCGCCAGCGTGCTGTTCAACGACACCAGCTG GATGGACCTGTTGCTGGAAGACCGGGCTTTTCTGCGCGCCATTCTCTACACACTACTGACCTTCGCCTGCCTGTCGTCAATGGGGCGTCGCGGGCTGGCA CCGGTGCTTACACCGATCAACGATTTCATCATGCGCTATCGCTGGCAGGCCCTGCTGCTGCTGGGCCTGATCGCGACCTATCGAATGTCGGACACCGTGA TGGGTGTGATGGCCAACGTGTTCTACATTGATCAGGGCTTTACCAAGGACCAGATCGCCAGCGTCAGCAAAATCTTCGGCCTGATCATGACCTTGCTCGG CGCAGGTGCCGGTGGCCTGCTGATCGTGCGCTTCGGCATCATGCCGATCCTGTTCATCGGCGGCTTCGCCTCGGCATCCACCAATATCCTGTTCCTGTTG CTGGCGGACATGGGGCCGAACGTGAAGATGCTGATCCTGACCATCTCACTGGACAACCTCAGTTCCGGGCTGGCGACATCGGCGTTCGTCGCCTACCTGT CGAGCCTCACCAACCTGAAGTTTTCCGCCACTCAATACGCCCTGCTCAGCTCCATCATGCTGCTGTTGCCGCGCCTGCTGGGCGGCTATTCAGGCGTGGT GGTGGAGAAATTCGGCTATCACAACTTCTTCCTGATCACCGCACTGCTGGGTATCCCGACCCTGGTGATGATCATCCTGCAGTGGAACCGGGAAATACGC ACGGCAAAAGCCGAAGCACCCATAGAAGTTTCAGAGATCGAGAAGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCTGGCTAACCTTTAAAGGAACGAAATTGGACACCGAAAATAAAGGCAGCGCCGGGAGCCCTGTTCCACTGACCCTGATAAGCCTGGGCATCTGGTTG CCGATCATCGGCACCGCTTACCTGTCGAGCGGGCCTGTAGACCCTTCTGCCTCAACCGCATTTGGCGGCGGCACGGTCATCCTCGCGCAGATTGAAATCT TCGCCATCATCTTTCTGCTGGTTTATGCCTTCGCCATAAAACCGTGGCGGCTGTCAAAACGCGTACGCGCAGTGTTTTACGTCAATGCACTGGCCGCAGT CGTCGCAGGCGTTACCATCATCACGACCCTGGCAAGGATGTAGTGCCCCCCGATTAAAAGCCCTGACGCTCACGCCTCAGGGCTTTTTTACGCAAAAAAA CTTTTCTTTCAAAACAGACCTGACCGGACTGCACCGCTTTAATTGAGCGCAACCGGGCACCCCGGCGGCGCACGGTTGTTATTTTAGGGGTGTAGACTCA
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| Amino Acid Sequence |
>permease
MPRKTWRAALAAYASPSTLVLLLLGFAAGMPYMLVFSTLSVWLREAGVARETIGYASLIGLAYAFKWVWSPLLDQWRLPFLGKLGRRRSWLVLAQSLVIL GLIGMGFCDPQKHLSWLIAIAVVVAFASATQDIAIDAYRLEIAQDTQQAALAASYMSGYRVAALLATAGALYFAEGFGSTGFAYKHAAWTGTYVLFGLLM LPALVTTLIMREPPVPLRTQLSAARYGFTHQLASVFVLIVLLVSVPAMFTQLYNTDFASVLFNDTSWMDLLLEDRAFLRAILYTLLTFACLSSMGRRGLA PVLTPINDFIMRYRWQALLLLGLIATYRMSDTVMGVMANVFYIDQGFTKDQIASVSKIFGLIMTLLGAGAGGLLIVRFGIMPILFIGGFASASTNILFLL LADMGPNVKMLILTISLDNLSSGLATSAFVAYLSSLTNLKFSATQYALLSSIMLLLPRLLGGYSGVVVEKFGYHNFFLITALLGIPTLVMIILQWNREIR TAKAEAPIEVSEIEKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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