Pseudomonas syringae pv. tomato NYS-T1, NB04_RS16525
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCAGCGGCGGATTGCTGCTGGTTTCGCAGTTCACGCTGGCTGCCGATACCAAAAGCGGGTTGCGCGCAGGGTTCTCGAAAGCCGCTGCTCCAGCGCTG GGTGCCGAGTTGTTTGACTACCTATTGAGTCAGGCCAGAATCGCGCACCCGGTCGTGGCAGCGGGCCAATTTGGTGCGGATATGCAAGTGCACCTTATAA ATGATGGCCCTGTGACATTTTTGTTTGAGACGTAAGCTACGATTTCACCGTTACGCCTGGCGAATTCATCGTTCGGTCAGGAAATAAATTCTTTGTCATA CCTGATGCGTTGTAGCGCGCGCTGCTGGATAATCGCGCGCTACGGGGATCGGCACTGTTGGTCCAATTGGTATGACAAAAGCGGTTCTGACATCGGATTG GGGAATCATTAAGCCCATTCGGAGTCGGAACAATGCTCGCCAACCCGGCATTGATAGCTGGCCGTTGGTTTATTCATCTGTTTTTCGGCGAGGGTTGCTC
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| DNA Sequence for Gene |
>NB04_RS16525
GTGATTGTTAGTCCCTGTGATGCTCCAAAGACACCCGTCAAGCGGTTGCGTAGTGCACTTCTGGCAAGCTCGGCCCTTGTGTGCCTGTTCAGTGCAGGCC AGCTGTGGGCGTTCAGCCTTGATGATGTAGCGGCAAAGGCCAAAGAAATGGCCGGGCAGAAGTTCGAGGCTCCGCGGAGCAATCTGCCGAACGAACTGCG CGACATGAAGTTCGCCGACTATCAGAAGATCCGCTTCCGTGATGACAAGGCCGAATGGGCGGGCGACAAGACCCCGTTCAAAGTGTCTTTCTACCACCAG GGCATGCACTTCGATACGCCGGTCAAGATCAACGAAGTGACCGCGACCAGCGTTGACGAGATCAAGTATGACGCCAGTCGGTTTGACTTCGGCGGCCTTA ACATCGATCCGAAAACCTCCGAGAAACTGGGTTATGCCGGTTTCCGCGTTCTGTATCCGATCAACAAGGATGACAAGCAGGACGAAATCATGACCATGCT GGGCGCGAGCTACTTCCGCGTCATCGGCAAGGGTCAGGTTTATGGCCTGTCCGCACGCGGCATGGCCATCGACACGGCATCGCCGTCCGGTGAAGAGTTC CCGCGCTTCAAGGAATTCTGGATCGAGAAGCCAGGCCCGGATGACAACCATCTGGTGATCTTCGCTCTGCTCGATTCGCCACGCGCCACGGGTGCCTACC AGTTGACCCTGCGTCCTGGCACCAACACGCTGGTTGACGTCAAATCGCGCATGTTCCTGCGTGACAAGGTCAACAAGCTCGGTGTTGCGCCGCTGACCAG CATGTTCCTGTTCGGCGCCAACCAGCCTTCGCGTGTGCCTAACTACCGTCGCGAGCTGCACGACTCCAGCGGTCTGTCGATTCAGGCAGCCAATGGCGAG TGGTTGTGGCGTCCGCTGAACAACCCTAAACATCTGTCCATCAGCAGCTTCTCGGTCGAAAACCCGCGTGGTTTCGGTTTGCTGCAACGTGGTCGTGATT TCAGCCAGTACGAAGACCTCGATGATCGCTACGACAAGCGCCCTAGCGCCTGGATCGAGCCAAAAGGTGACTGGGGCAAGGGCACCGTCGAGCTGGTCGA AATCCCGACTGCCGACGAGACCAACGACAACATCGTCGCGTTCTGGAAGCCTGAGACCCTCAAGGCGCCGGGCGAGGAAATGGCGTTCGATTACCGTCTG CACTGGACCATGCAGGAAAACTCGATTCACTCGCCGGATCTGGGCTGGGTCAAACAGACCCAACGCTCCATCGGTGACGTGCGTCAGTCCAACCTGATTC GTCAGCCGGACGGCAGCCTTGCATTTCTGGTCGACTTCGTTGGTCCGGTACTGGCCGCATTGCCGGAAGACAAGACCATTCGTAGCCAGGTCACTACCGA CGACAACGTCGAGCTGGTGGAAAACAACCTGCGTTACAACCCGGTCACCAAAGGCTACCGCCTGACCCTTCGTGTGAAGGTCAAGGATGCCGGCAAGGCG ACCGAGATGCGCGCTTATCTGCTGCGTGAAATCCCTGCCGAGCCGGGCAAGGAACCTGCGTTGCTCGTCGCTGATAAAGCTGACGAGAAGAAAGCTGCCG CCAAGGAAGCTGCTGCCAAGGAAGCTGCAAAGCCCGCCGTTGCCAAAGAGTCCGCCAACGACCAGGTAGAAATTGCCAAAGCCGACGCGCCGAAGCCTGA AGCCGCCAAGCCGGAAGCTGGCAAAGCTGATGCATCCAAGGCCGACGCTGCCAAAGGTGACGTTGCCAAGGCTGATGCAGCCAAGGCTGATGACGTAGCC AAGGGCAAGGACGGTAAAGATATTCAGCAGCCTGCTACCGAGGCAGCACCCACCCATCCGGAACCGGCCAAGACGTTGCAAGTCATGACCGAGACCTGGA GCTATCAGTTGCCGAGCGATGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCTCAATGGGTGCCAGTGTCTCTGAACGAGTACCTGGCGCATTTGCCGATGAGCGACGAGCAGCGGGCAGAACTTGCCAGCTGCACAACCTTCGCCGAG TTGCATGAACGCCTTTCGGCGCAGCCGGTCACCGATCCTGCCGAGGCCGCTCAGGCTTCGGTAGGCCGTCGTCTGACGCTGTCCGCAGACGATCTGGAAG ACGCCGAGATGCTCGGTGTCGATGCCAGCGGGCGTCTGTGCCTGAAGGCTACACCGCCGATTCGCCGGACCAAGGTTGTGCCCGAGCCGTGGCGCACCAA CATTCTGGTGCGTGGCTGGCGCCGCCTGACCGGCAAGAGCAACCCGCCCAAGCCGGATCACAGCGATCTGCCTCGGGATCTGCCGAAGTCTCGCTGGCGT ACTGTCGGTTCGATCCGCCGCTATATTCTGCTGATCCTCATGCTGGGTCAGACGATTGTGGCTGGCTCGTACATGAAAGGCATCTTGCCGTATCAGGGCT
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| Amino Acid Sequence |
>glucan biosynthesis protein G
MIVSPCDAPKTPVKRLRSALLASSALVCLFSAGQLWAFSLDDVAAKAKEMAGQKFEAPRSNLPNELRDMKFADYQKIRFRDDKAEWAGDKTPFKVSFYHQ GMHFDTPVKINEVTATSVDEIKYDASRFDFGGLNIDPKTSEKLGYAGFRVLYPINKDDKQDEIMTMLGASYFRVIGKGQVYGLSARGMAIDTASPSGEEF PRFKEFWIEKPGPDDNHLVIFALLDSPRATGAYQLTLRPGTNTLVDVKSRMFLRDKVNKLGVAPLTSMFLFGANQPSRVPNYRRELHDSSGLSIQAANGE WLWRPLNNPKHLSISSFSVENPRGFGLLQRGRDFSQYEDLDDRYDKRPSAWIEPKGDWGKGTVELVEIPTADETNDNIVAFWKPETLKAPGEEMAFDYRL HWTMQENSIHSPDLGWVKQTQRSIGDVRQSNLIRQPDGSLAFLVDFVGPVLAALPEDKTIRSQVTTDDNVELVENNLRYNPVTKGYRLTLRVKVKDAGKA TEMRAYLLREIPAEPGKEPALLVADKADEKKAAAKEAAAKEAAKPAVAKESANDQVEIAKADAPKPEAAKPEAGKADASKADAAKGDVAKADAAKADDVA KGKDGKDIQQPATEAAPTHPEPAKTLQVMTETWSYQLPSDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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