Pseudomonas syringae pv. tomato NYS-T1, NB04_RS16365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGATTTTTTGGATATCGTAAAAGGCTCTGACTATGTATATGTTAATGGTCAGTGGTTTAAGCGTATTGACAAGTTGCCCGGTCAAAATAAAAAATTCT TTGATAGCACCTTTGGCATTGGTAAAAGAATTATTGATGTGAGAACGAATGATAAGGGTGATTTGCAAATAGTTAGTTTGTTTGATTCTGTTGTTGACGG AGCTTCTTATAATGCCGTTGTGAATTTGCAGTAAAACATATGCAATATGCACATTAATCAGTCGCATCAATGCGAGCAAAATCGTAATATCTGTCGCTTT GGCTTGCGTTGCGCCTCAATTGAAAATTATTGCGGGCGGGTGCTTTGTTCGTACTGATTCGGGTTGGAGTGAGTTGACGGTTGTTCACTTACACGTTCTG CCCCCCCCCAAATGAACCCTCCCTCTCGCCTGCAGTCGCATAGTCACGCTATTCTCTCGCCCCACAACGCCCGCACCCGGCAGCCGCACAAGGAGTCTGC
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| DNA Sequence for Gene |
>NB04_RS16365
ATGCCCGTTCGTATTTCAAGACTGGTTACGTTCGGTCTGGCCGCTGCCTTGGCGGCGCTGGCAGGCTGTGGCGAGGAGAAACCGCTCGCTCCGGAACTGC CACGGGTTTACGTGCAATCGGTGAAAAGCGCCGACTTCGCGGCCAGTGTCGCCTTGACCGGCGACGTTCAGGCGCGGGTGCAGACTCGTCTGTCTTTCCG GGTGAATGGCAAGATCATTCAGCGCAACGTGGATGTCGGCGACCGCGTAACGGCACGGCAGGTGCTGGCCCGTCTTGACCCCAGGGATTTGCAGATCAAT GTCGATTCGGCTGCTGCCTCCGTGGCCGCCGAGCAGGCTCGCGTCAGTCAGGCCAGCGCTGCGTTCGTGCGCCAGCAAAAGCTGTTGCCCAAGGGTTACA CCAGCCGCAGCGAATATGACTCCGCACAGGCGGCCGTGCGCGGCAGCGAAAGTTCGTTGAAAGCCGCGCAGGCGCAATTGGCCAATGCCCGTGAACAGTT GAGTTACACCGCGCTGGTCGCGGATGCGCCGGGGGTGATTACGGCGCGTCAGGCTGAGGTCGGGCAGGTGGTTCAGGCGACGGTGCCTATTTTTGACCTG GCGCGTGATGGTGAGCGCGACGCGGTGTTCAATGTTTACGAATCGCTGTTCGTCCAGCCGCCCACCGATCAAGCCGTACAGGTCACGCTGCTCGACAATC CGGCTATCAAGGTCAGCGGCAAGGTGCGCGAAGTGACCCCGGCGGTTTCGGCGCAAACCGGGACGTTGCAGGTCAAGATCGCGCTGGACCCGCTGCCGGA AGGCATGGACCTCGGTTCGGTGGTCAGTGTGGCGCTGAGCGCGCCGGCCAATGCCAGTGTCGAGTTGCCGTGGTCGGCGCTGACCAAGGACCTCGGCGAG CACTTGGGCAAACCCGCTGTGTGGGTGGTCGACGAGCAGGGCAAGGTCAATCTGCGCAAGGTGACGGTCACCCGTTACCTGACCTCCAAAGTCATCATCG GCGATGGGCTGAAAGGTGGAGAGAACGTTGTGGTCGCAGGCGGACAGTTGTTACACCCTGATATGCAGGTCGAGATTGCCGAACAACCCAAACAGCAGAA TGCGCAGGTGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTATGTCATGCCTGTTGCTGGGCGGCCTTCTGCTGAGTGGCTGTGGCAAGGACGAAGCACCGCCCGAGCCCATACGACCGGTAGTGTTCGTTGAAGC ACAGCCCGAATCGATGCAGGATTTCGGGCGTTTCGCTGGCAATATCCAGGCGCGTTATCAGAGCGTGCTGGGTTTTCGAGTGGCAGGGCGCATTGCCCGA CGCAATGTGGACGTCGGCAGCGAAGTGAAGAAAGGCGATTTGCTCGCAACCCTCGATCCGACCGATCAGCAGAATAACGTGCGCGGTCGTCAAGGCGATC TGGCCAATGTTCAGGCGCAGTGGATCAACGCGCAGGCCAACGCCCGTCGTCAGCAAGAACTGTTCGACCGTGGTGTCGGTGCCCAGGCGCAGCTGGACGT CGCGCTCACTGACCTCAAGACTGCCAGTTCGTCACTGGAGCAGGCCAAGGCTGCCGAGCAGCAGGCGCGCGATCAATTGAGTTACAGCGAACTGCACAGC
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| Amino Acid Sequence |
>RND transporter
MPVRISRLVTFGLAAALAALAGCGEEKPLAPELPRVYVQSVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPRDLQIN VDSAAASVAAEQARVSQASAAFVRQQKLLPKGYTSRSEYDSAQAAVRGSESSLKAAQAQLANAREQLSYTALVADAPGVITARQAEVGQVVQATVPIFDL ARDGERDAVFNVYESLFVQPPTDQAVQVTLLDNPAIKVSGKVREVTPAVSAQTGTLQVKIALDPLPEGMDLGSVVSVALSAPANASVELPWSALTKDLGE HLGKPAVWVVDEQGKVNLRKVTVTRYLTSKVIIGDGLKGGENVVVAGGQLLHPDMQVEIAEQPKQQNAQVQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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