Pseudomonas syringae pv. tomato NYS-T1, NB04_RS12070 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTTGAAAAGACTTTGAGCGAACTTGTTGAACTCGAAGGTTTGACCCTTAGCTACTACCGAGGATGGGACAAGGAAAAAGAGCTGAGCACTGTGCTC GCCTCCTCCCTGAATCGCGATCAGCAAATGGGCCACACCCAGGCAGGACCACAACGTGCTGATCTGCGCCTTAGATTAGGTGCCCACAACGCGGCAGATA TCTTGTCACGTGGTCAGCAAAAATTGGTGGTCTGTGCACTGCGTATTGCTCAAGGACACCTGGTCAGCCAGGTCCGTCGCGGCCAGTGTATTTACCTAGT GGATGACTTGCCCTCCGAACTGGACGACAACCATCGACGCGCGCTTTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTATTTATCACCTGTGTAGATCAA GAATTTTTGAGGGAAGGCTGGCAGACGGATACGCCAGTCGCATTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGATTGC
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| DNA Sequence for Gene |
>NB04_RS12070
|gyrB
ATGAGCGAAAACCAAACGTACGACTCGTCCAGCATTAAAGTGCTGAAAGGACTTGATGCCGTACGCAAGCGTCCCGGAATGTACATCGGTGATACAGACG ATGGCAGCGGTCTGCACCATATGGTGTTCGAGGTGGTTGATAACTCGATCGACGAAGCATTGGCAGGCCATTGCGACGACATCAGCATCATCATCCATCC AGACGAATCTATCACCGTGCGCGACAACGGCCGCGGTATTCCGGTAGACGTGCATAAAGAAGAAGGCGTGTCGGCAGCCGAAGTCATCATGACCGTGCTC CACGCGGGTGGTAAGTTCGATGACAACTCCTACAAAGTATCCGGCGGTTTGCACGGTGTAGGTGTTTCCGTGGTCAACGCCCTTTCAGAACTTCTGTTGC TGACAGTACGTCGCAGCGGCAAAATCTGGGAACAGACCTACATTCACGGTGTTCCACAAGAACCGATGAAAATCGTCGGCGAAAGCGACAGCACCGGCAC CCAGATTCATTTCAAGCCATCTGCTGAGACCTTCAAGAATATCCACTTTAGCTGGGACATTCTGGCCAAGCGGATCCGTGAACTGTCGTTCCTGAACTCC GGTGTCGGCATCGTCCTCAAGGACGAGCGTAGCGGCAAGGAAGAACTGTTCAAGTACGAAGGCGGTTTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACGCCGGTCAACGAAGTGTTCCACTTCAATGTCCAGCGCGATGACGGTATTGGCGTCGAGATTGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCACAGCGCGATGGCGGCACTCACCTGGTGGGGTTCCGATCCGCACTGACGCGTAACCTGAACAACTACATCGAGCAG GAAGGTCTGGCCAAGAAGCACAAGGTCGCGACCACCGGTGACGATGCGCGCGAAGGTCTGACTGCAATTATCTCGGTCAAAGTACCTGATCCGAAGTTCA GCTCGCAGACCAAAGACAAGCTGGTTTCGTCCGAAGTCAAAACTGCAGTCGAACAGGAAATGGGCAAGTACTTCTCCGACTTCCTGCTGGAAAACCCGAA CGAAGCTAAAGCCGTCGTCGGCAAGATGATCGACGCAGCCCGTGCCCGTGAAGCTGCGCGTAAGGCCCGTGAGATGACTCGCCGTAAAGGCGCTTTGGAC ATCGCCGGCTTGCCAGGCAAACTGGCTGACTGCCAGGAAAAAGACCCTGCCCTTTCCGAACTGTACCTGGTGGAAGGGGACTCTGCTGGCGGATCAGCCA AGCAGGGACGTAACCGTAGAACCCAGGCCATCCTGCCTCTCAAGGGCAAGATTCTGAACGTTGAAAAAGCACGCTTCGACAAGATGATCTCTTCTCAGGA AGTGGGCACCTTGATCACCGCGCTGGGCTGTGGCATTGGCCGCGAAGAGTACAACATCGACAAGTTGCGCTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGCTCGCACATCCGCACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCGGAGCTAATCGAGCGTGGCTACATCTACATCGCTCAGCCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAATACATGACCCAATCGGCCCTTGAAGACGCCAGTCT GCACCTCAGCGAGTCTGCACCGGGTATCTCGGGCACCGCGCTGGAGAAACTGGTTCACGACTTCCGCATGGTCATGAAAACCCTCAAGCGCCTTTCGCGT CTGTACCCACAGGAATTGACCGAACACTTCGTCTACCTGCCGCCAATCACCCTGGAGCAGCTATCCGACCACGAGGGCATGCAAGCCTGGCTGGCACTGT TCGACGTGCGTCTGCGCACTGGTGAGAAGTCGGGTCTGGTCTACAAAGCCAGCCTGCGCGAAGACCGTGAGCGTAACGTCTGGCTGCCAGAGGTCGAACT GATCTCCCACGGCCTGTCGAATTACATCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTCACGGCCCTGGGCGCGCAGATAAGCACG CTGCTGGAAGAAGGTGCCTACGTACAACGTGGCGAGCGTAAAAAGCCTGTCACCGAGTTCAAACAAGCCCTCGCCTGGCTGATGGCTGAAAGCACCAAGC GCCATACCATTCAGCGCTACAAAGGACTGGGTGAAATGAACCCGGACCAACTCTGGGAAACCACCATGGACCCAAGCGTGCGTCGCATGCTGAAAGTCAC TATCGAAGACGCCATCGGCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAACCACGCCGTGACTTCATCGAGAGCAATGCGCTGGCGGTG TCCAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGACGCTTGATCAAACATCTACCCCGGTGAAAGCCGGGGTTTTTGTTTGTGTGGCGATTGAAACACCCAAGCGAATTGCTACAGTGTTCCACGTGGAAC ACATTATCGTGAGAAGCAAGCAGGCTTTTTTACCCGGTCAGCGAATCCTCCAGGAGCAAGCTTGCCGAAGAAAGGTTGATTTGCCAGCATTTATTTAGAG GCTGACGCTCCACCTGCATGAGCTAAAACAGCTTCGCCAGACGCAGATTCAACCGGGACTTCTCCATGAAGCCCTGCTCCACTTCCACATCTCTACCGAT CACTGCCTGTACCTGAATCGATGGCGTCAGCATGTGAGCGGCGCTGATGCGTACATACGTGGTGCTCAGCTTATCGTCCTGATTGATGCCACCCACCCGG TTTTCTCCGCCATTGATGTAGCCACCACCGAACGCAAAATGGTTTTGTGCCGAAAGGTTGTCGCGCAGATAAGCCTGATGTTCGTAGCGTGTTTTTTGTT
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGESDSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKTLKRLSR LYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDVRLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQIST LLEEGAYVQRGERKKPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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