Pseudomonas syringae pv. tomato NYS-T1, NB04_RS12015

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. tomato strain NYS-T1 Contig8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCGGACCGATGCTGCTCAAGGCCGTCACGCCGATTAGCGCGCAGGACACCGGCGGCACGTTGCACGACCGCCTGGCCGAGCTCGGTCCGCCTGCGGTGT TACAGGCTATTGCTGGCTTGGCGGAGGGTTCGCTGGTCGGCGAGGCTCAGGACGACAGCCTGGCCAATTACGCGCACAAATTGAACAAGGATGAGGCGCG CATCGACTGGACACGTCCGGCCGATGAGCTGGAACGTCTGGTGCGCGCCTTCAATCCGTGGCCGATCTGCCACAGCACGCTGAACGAAGAAGCCTTGAAA GTGCTGGCGGCTGATCTGGCCGAAGGGCAGGGCGCACCGGGGACCATTCTCAGCGCCAGCAAGGACGGCCTGATCGTCGCCTGCGGCCAGAACGCCCTGC GCCTGACTCGCTTGCAACTGCCGGGCGGCAAGCCGTTGAATTTCACTGACCTGTTCAACAGTCGCCGCGAGAAATTCGCCATCGGCACGGTGCTGGGCCA
DNA Sequence for Gene
>NB04_RS12015
ATGAACCCGCGTCTGGCTGCCGCCAAGGCACTGGCTGCCGTGCTCAGCGGCAAGGCGTCGCTGAACAGTTCGTTGCCCACGCAACTGGACAAGGTCGAGC TACGTGATCGCGGCCTGACCCAGGACCTGGCTTTCGGGACGGCGCGCTGGCAGCCGCGCCTGTCGGCACTGGCCGCCAAACTGTTACAAAAGCCCTTCAA GGCCGCCGATGCAGACGTCGAAGCGTTGCTGCTGGTGGGGCTTTATCAGCTGTTTTACAGCCGCATCCCTGCGCATGCGGCCATTGGTGAAACTGTTGGC TGCGCCGACAAACTGAAAAAGCCGTGGGCCAAAGGCCTGCTCAATGCCGTGCTGCGCAATGCTCAACGCGATGGCGAAGCGCTGCTGATCGAACTGGAAC ACGACCCGGTGGTGCGCACCGCCCACCCGCGCTGGCTGCAAAAAGCCCTGAAAGCCGCATGGCCGGAGCAGTGGGAAGCCATTTGCGCAGCCAACAACGC GCACCCGCCGATGATTTTGCGGGTCAACCGCCGTCACCAGCGTCGCGATCAGTACCTTGAGCTGCTCAAGACTGCCGGGCTGGAAGCGAGCGCGTGCACG TTCAGTCAGGACGGTATCGTGCTGGCCGAGCCGTGCGATGTGCGCTCGCTGCCCGGTTTTGCCGAAGGCTGGATCAGTGTGCAGGACGAAGCCGCGCAAC TGGCCGCCGACCTGCTGGAACTGGCCCCCGGCCAACGCGTGCTCGACGCCTGCTGTGCGCCGGGTGGCAAGACCTGCCATTTGCTGGAGGTGCAGCCGCA ACTGAGCGGCGTGGTGGCGGTAGACCTGGAAGCCAAGCGCCTGGTGCGCGTGCGTGAAAACCTTGATCGTCTCGGTCTGGACGCTGAACTGATCGCCGCC GATGCCCGCGAGACAGCGCAGTGGTGGGATGGCAAGCCGTTCCAGCGCATTCTGCTCGACGCCCCGTGCTCGGCCACCGGCGTGATCCGTCGCCACCCGG ACATCAAACTGACCCGCCAACTGGACGACATCGCCGCGCTGGCCACCTTGCAGGGCGAACTGCTCGACGCGTTGTGGCCCACGCTGCAAGTAGGCGGCAT GCTGGTGTACGCGACCTGCTCGACACTGCCAACTGAAAACACCGACGTCATCGAGGCGTTTCTGGCCCGCACCTCTGGGGCCAGAGAACTGGATATCGCC GGGCAGGCCGGGCAGCCACCGGCCGGCATAAAGCAACCGCACGGTCGTCAGTTGTTGGCCCAACAAGGTGGCCACGATGGTTTCTACTACGCCAAACTGA TCAAGATCGCAGCTCAAGATCGCGGCGGCGCAGGAGTAACCAGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGATCATCATTCTGGGTGCGGGTCAGGTGGGCGGTACACTGGCCGAGCATCTGGCGGGCGAAGCCAACGACATCACCGTGGTCGACACCGACGGCGACCG CTTGCGCGATCTGGGTGATCGCCTGGACATCCGCACCGTGCAGGGCAAAGGCTCGTATCCGGCGGTGCTGCGCCAGGCAGGTGCCGACGACGCTGACATG CTGGTCGCCGTGACCAGCAGCGACGAAGCCAACATGATCGCCTGCCAGGTGGCCCACACGCTGTTTCACACACCGACCAAGATCGCGCGCATCCGTGAAG CGGCGTACCTGACCCGCGCAGGCCTGTTCGACAAGAACGCGATTCCGGTCGACGTGCTGATCAGCCCGGAACAGGTGGTCACCAATTACATCAAGCGCCT GATCGAGTACCCCGGCGCGCTTCAGGTAATCGATTTCGCCGAAGGCAAGGCGCAGCTGGTCGCGGTCAAAGCCTATTACGGCGGAGCGCTTGTCGGTCAG
Amino Acid Sequence
>ribosomal RNA small subunit methyltransferase B
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVELRDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHQRRDQYLELLKTAGLEASACT FSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLDAELIAA DARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIA GQAGQPPAGIKQPHGRQLLAQQGGHDGFYYAKLIKIAAQDRGGAGVTS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site