Pseudomonas syringae pv. tomato NYS-T1, NB04_RS09185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCGCTACAGCGGGCTGTATTTGCGTTCCGTCGGATCCTTTGGTGAATATCGCGGCACCCTCATTATCGGATTCATGGCGTATGTGGAAAACCGGAA TACCGGTATCACGCGCGTGGCTGATCACTCGGCTGGCATTCGCCACAGCGGCTTCGATCCCGGACAACGGCAACTTGCCGGTCGGCAGGTATTCGTTTTG CAGATCAACAACTACGAGGCCTCGGTTCATAACGCTCTCCAATTATCAGGTCATTCATTTGATTTTCCGCGGAGGCTGATCTGCCTCTCACAGGCTGTTT AAAAGCAGGTCAGTGCTGTTAAGGACATCATTCTTGCCCAATGCCTGGAGGCCTGACAGTGGCCTGAATGACATATTTCGATATAATCAGGCCAATAAGC GATACATCTTTCCATGCCCGAAAATACATTTACATGAACGGTCGATTTTGGTTTCGGCGCGCGTTCCATAGTAAGTACACAGCACATCCGAGGCTGTCTG
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| DNA Sequence for Gene |
>NB04_RS09185
ATGCAATCCATACGTGTTGCTGTTCTGGCGTTCAACGGCGTCAGCCTGTTCCATCTTTCCGTGCCGGGAGTGGTGCTGGGGACAACCCAGTCTGCGCCCG GCGAGCCGCGATACGAGGTCAGTTACTGCGCAGAGTCGCCGGGAATGATAAGCAGCGATCAGGGCATCGGACTGCAAGTCACTCATGGCCTGGAACTGAT GGAGGCGTGCGACGTCATTGTCATTCCGGCGTGGGGTGATCAATCGGTTGCTGCATCTGCGCCGCTCGTCAAAGCCCTTCAGCTTGCCAACGCCCAAGGC AAGCTCATGGTCGGGTTGTGCCTGGGGGCATTCGTGCTCGCAGATGCCGGCCTGCTTGATGGCAAAGAAGCAACCACTCACTGGGCAGCCCGAGAAGAGT TTGCTCGACGCTTTCCTGACGTGCGTTTCAGGCCAGAAGTGCTCTATGTCAGTGATGGCAACATCATGACCTCTGCAGGAACCGTGGCGGCCATCGATTG CTGCCTGCATTTGATACGCCAACGGCTCGGTGCCGATGTGGCAAATCACACCGCGAAGATGCTGGTGACACCGCCGCACAGGCAAGGCGGTCAGGCTCAA TATGTCGAGCGTCCTGTGCCGCAACTGTCCAGCGAAACGCATTTGCATGAGGTACTGGCGTGGGCGAGGATGAACCTGTCCAGTGACCTCTCACTCGACG CCTTGGCCGAGAGGGCAAAAATGAGCAGGCGCACGTTTACTCGGCGCTTTCGGGAGGCCACCGGCAGTACCGTTTCCAGATGGTTGAACGCCGAGCGAGT CGTCAGGGCGCAAGCGCTGCTGGAGACGACCGATTTACCTATCGAGTGCGTTGCCGACGAGGCAGGTTTTGGAACGCCTTTATCCTTGAGGCAGCAGTTT GCTGTTCATCTTGGCACTTCGCCTTCGGCGTATCGGCGAATGTTTTTTCGTCAAATCAAGCCTGAAGAAAAAGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGCTGTGGGTTTTCCAAGGTTTTGCGCCAGGCAAGTGAATTGCCGAAACCGAAAAGGCCTCGGCAATCTTCCCTATCAGAAATCCACAGTCACTCCGG TGTAAAGTGCGCGACCATCACCCGGGGAATGCAGAGATCCCTGGGCGCCATCCGGGTCGTACCAGACGTATTCATAATGCCGGTTAGTGAGGTTTTTCAA CTGCAGGTCAACGCTCACTGACTGCGTCACCTTGTAGGTTGCACCGAGGTTCATCAGCACGTAACCGCCGTAAGTCCCCTTGGTATTTTCCCGCTCCAGA TAATAGTTCGTCTGGCCATTCATCCAGGCAGTCAACTGTAATGCGGGTGTCGCGTCATAGCTGATGCCAGCGTTGTAAAGGTGATGCGGGATATGGTCGA TTTCCCGACCTTTGCTGCCCGGCAACGTGGCACTCGGCTGGAGTATTTTCGAATACTGCCAGGAATAGGCCAGCCATATCTCAGTGCGCTCGTCAGGGTG
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MQSIRVAVLAFNGVSLFHLSVPGVVLGTTQSAPGEPRYEVSYCAESPGMISSDQGIGLQVTHGLELMEACDVIVIPAWGDQSVAASAPLVKALQLANAQG KLMVGLCLGAFVLADAGLLDGKEATTHWAAREEFARRFPDVRFRPEVLYVSDGNIMTSAGTVAAIDCCLHLIRQRLGADVANHTAKMLVTPPHRQGGQAQ YVERPVPQLSSETHLHEVLAWARMNLSSDLSLDALAERAKMSRRTFTRRFREATGSTVSRWLNAERVVRAQALLETTDLPIECVADEAGFGTPLSLRQQF AVHLGTSPSAYRRMFFRQIKPEEKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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