Pseudomonas syringae pv. tomato NYS-T1, NB04_RS08915

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. tomato strain NYS-T1 Contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCAGTGCTGTTATGCGAAGACAATAAGTTGCGGCCCGAGCACTTTCCGATTGCCTCCGATTCAGTGAGCCATCCGGCCTGTTTAACACTGCGCGAACA CATCGAGCAGTTCGAGCGTGGCGTTCTCATGGAGTGTTTGCGCGACAGCAACGGTAATCGCAGTCGTGCAGCCCGCACATTGGGTGTATCGCGCCGCACT CTGCTTTACCGTCTGGCTCATTTGAAAATGGGCGCCACTCATGAAAAGCGTGATTAACCGTATCTCCAGACTGCCTGTTCATTTCTTTTTTTGAGGAGCT GTTTCAATGAACTTCCATTGTGGGCCTGCTTTGATTTTTATGCTGCTTGCCTTGATGTGCATTAGCGGGTGCAACGGCCATTACCGGTTCAGCGATGATC AATACCGCGCGCTGGGCAGCCCCGAACCGGTCAATCGCGATAACTAACAATAACGCGAAAGGTTGATGGCCTTCGCTCCAGACTTGAAGGAATAACTTAG
DNA Sequence for Gene
>NB04_RS08915
ATGATTTTTTATTGCACCCGGCTGGCCCGGTTACTGCTGTTGCTCACGCTCGCCGGTTGCTCAGCGCTTTCGCCATACTCTACACAAACCCGTCTGGATA TCACGCTACGCGCGGACCATCAGCTCAATCCGGATTTGAATGGCCGGCCGTCTCCAGTTGTTCTGAAACTGCTGGAACTCAAACGTCCGGTCACGTTTCA ATCGATGGATTTCTTTTCACTGTATCAGCGTACGGATCACGTAATGGAGCAAGACCTTGTCGCAAGCGAAGAGTTTGAGCTTCGTCCCGGCGAGAGCATT GCATTGAAGCTGAAACTGGAAGAGGGCAGTCGTTACGTCGGCCTGTTGGCGGCTTATCGCAACCTGCCGGAGACCCGCTGGCGTCATGTGATTCAGATAA TCCCCGAACAACAGAATCATGCTGCTTTCATCCTGGGTGAGTCTGGCATCCAGCGAGTCGACAGCCCGATCAGCGCAGGAAATCCCACATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATTCGCACAAGGTTATCTGGCAGGAAGGCATGCTGCTGCGTCCGCAGCACTTTCAGCATAACGACCGTTATTACGATCATCAGTTGAAAGTCCGTACCCG TCTGGCGGGGGCCTTCAACTGGGGGTTCACGGCGCTGGAAATTGATCGGCAATTTCTGAGCTCTGGGCAGATTGTGCTTAACCAGGCCTCGGGCATATTC CCGGATGGCAGCGTCTTCGATATCGGTGACCGTGAGCGTCCATTGGCGCTGGATATTGCGCCCAACACTTCAAACCTGTCGGTCTATGTAGCACTGCCGA TCGTAGCGGGTAATTGCATCGAGGCACGCAGCCAGGAACAGTCGGATGTGTTCGCGCGTTTCACCGCCTACGCCGCCAGCGTCGCGGATTCCAACGCTGG AGAGGGCAGTTCCACACCGGTTGTCTGCGCGCGCCCCGAGTTTCGTCTGCTGCTGGGTGAACCACAAGGCGAGCACACCTACGTGATGCTCAAGTTGTGC
Amino Acid Sequence
>type VI secretion protein
MIFYCTRLARLLLLLTLAGCSALSPYSTQTRLDITLRADHQLNPDLNGRPSPVVLKLLELKRPVTFQSMDFFSLYQRTDHVMEQDLVASEEFELRPGESI ALKLKLEEGSRYVGLLAAYRNLPETRWRHVIQIIPEQQNHAAFILGESGIQRVDSPISAGNPT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site