Pseudomonas syringae pv. tomato NYS-T1, NB04_RS07975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGTTTTCCTGGCGGCGGTATCGAGCTGGATGCCAATGCCAAGGCGCGTCTGGACAACATGGTGGCTTACTTGAAGGCCGACCCGACGGTCAACCGTAT CGAGCTGGACGGCCATTCGGACAACAGCGGCAATCGCCTGACCAACCGTGACCTGTCCCGCCGTCGTGCGCTGGCGGTCATGGACTACTTCAAGGCCCAG GGCATCCCCGAGCAGCAGATCACCCTGCGCTTTCACGGCGAACGCTACCCGCTGGCGCCCAACACCAATAACGCCAATCGGGCGCGCAACCGGCGCGTGA ACGTGCATCTGGAACGCGTTGCGCCCGACGAACGCCCGGTGCCGGTCGCCTCTTCGGCGAGTGCTGCGCATACGTCCTGAGCCATCAGGCACGCCTTCGC CAAACGTCGCCTTGTCGTCACAAGCTGTCGCGCCCCTGTAAATTTGCTGGTTTGAACGGTAGAATCACCGGTTTTCCGTACAACCCGGTGGAGTGATGGC
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| DNA Sequence for Gene |
>NB04_RS07975
ATGGCGGACGTAAACAAGGTAGTTCTCGCGTATTCCGGTGGCCTGGATACTTCGGTAATCCTCAAGTGGCTGCAAGATACGTACAACTGCGAAGTGGTGA CCTTTACCGCTGACCTGGGTCAGGGTGAAGAAGTCGAACCGGCACGCGCCAAGGCTCAGGCCATGGGCGTGAAAGAAATCTACATCGACGACCTGCGCGA AGAGTTCGTGCGCGATTTCGTGTTCCCGATGTTCCGTGCCAATACCGTCTATGAAGGCGAGTACCTGCTGGGCACTTCCATTGCTCGTCCGCTGATTGCC AAGCGTCTGATCGAGATCGCCAACGAAACCGGCGCTGACGCCATTTCCCACGGCGCAACCGGTAAAGGCAATGACCAGGTACGTTTCGAACTGGGCGCCT ACGCGCTCAAGCCGGGCGTCAAGGTGATTGCTCCGTGGCGTGAATGGGACCTGCTGTCGCGCGAAAAGCTGATGGATTACGCCGAGAAGCACAATATTCC GATCGAGCGTCACGGCAAGAAGAAATCCCCGTACTCGATGGATGCCAACCTGCTGCACATCTCCTATGAAGGCGGCGTGCTGGAAGACACCTGGACCGAG CACGAAGAAGACATGTGGCGCTGGACCAAGTCCCCTGAGGACGCGCCGAACGTTGCAACCTACCTCGAGCTGACCTATCGCAATGGCGACATCGTCGCTC TGGACGGCGTCGACATGACCCCGGCTACCGTACTCGCTACCCTGAACCGCATTGGCGGCGAAAACGGTATCGGTCGTCTGGACATCGTTGAAAACCGTTA CGTGGGCATGAAGTCCCGTGGTTGCTACGAAACCCCGGGCGGCACCATCATGCTGCGTGCTCACCGCGCCATCGAATCGATCACCCTGGACCGCGAAGTC GCCCACCTCAAGGACGAATTGATGGTCAAGTACGCCAGCCTGATCTACACAGGTTACTGGTGGAGCCCTGAGCGTCTGATGCTGCAACAGATGATCGACG CGTCCCAGGTGCACGTGAACGGTGTTGTGCGTCTGAAGCTGTATAAAGGCAACGTGATCGTTACTGGCCGCAAGTCCGACGATTCACTGTTCGACGCCAA CATCGCCACCTTTGAAGACGACGCAGGTGCCTACGATCAGGCCGATGCAGCGGGCTTCATCAAGCTGAATGCGTTGCGCATGCGTATCGCTGCAAACAAA GGTCGCAAGCTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCGCCTGACTGTTTGAAACGTGCAGCCCTTTGCGGGGCTGCGCTTCGAACTTCTGGATGACCCCCAAGGTGTTTCAATGTCAGCGTGGCGTACGTCCT GCTGCACGCCGTGCCTTTTTGGGCGTGTCGCAAAGACGTGTGTGTTCCTCTGGTGCAGACCCGGGGAATGCTGGCGTCGGTATCAGAAAACTCAGGATGT CGTCCGTTGTGACGCCATGACGTTTCATTAACAACTTCAGTCGATTATCAAATTCAAGTTCCTGGACAAGTTGCTCATCGCACTTGAGTTCGTCAAGTCG TTGTTGCAGCGTTCTCAGCGCGTTTTCAGTATCGCGAAACTCTTTCAGTATCGACAAGGTGTGACCTGTTGGGCGTTTAGGTGTGAGTCAAAAAAATCGG CGGATTCAGTGGTTTTTTGCCGACACAGGCCAGCCTGTTTTCCCTGGACAGTAAATGCGTATGTAAAGAAGCCTAACCCTGTTTTTCCACGATTGATCGA
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| Amino Acid Sequence |
>argininosuccinate synthase
MADVNKVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEEVEPARAKAQAMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIA KRLIEIANETGADAISHGATGKGNDQVRFELGAYALKPGVKVIAPWREWDLLSREKLMDYAEKHNIPIERHGKKKSPYSMDANLLHISYEGGVLEDTWTE HEEDMWRWTKSPEDAPNVATYLELTYRNGDIVALDGVDMTPATVLATLNRIGGENGIGRLDIVENRYVGMKSRGCYETPGGTIMLRAHRAIESITLDREV AHLKDELMVKYASLIYTGYWWSPERLMLQQMIDASQVHVNGVVRLKLYKGNVIVTGRKSDDSLFDANIATFEDDAGAYDQADAAGFIKLNALRMRIAANK GRKLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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