Pseudomonas syringae pv. tomato NYS-T1, NB04_RS07570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACGGCGAGGTTTCCCGTGCGCCGTGGAGCGCCGCGGACCTGGCTCGTTTCACGCGTCTGGTACAGGATGCCGTCGGTTTCGACGCCAGCCGTGGTGAC AGTGTCAGCGTAATCAACGTGCCGTTCTCCAGTGAGCGCGCCGAGGTACTGCCTGAAGCGTCGTTCTATTCGCAACCGTGGTTCTGGGACATCGTCAAGC AGGCTGTGGGGGTGATCTTCATCCTGATCCTGGTGTTCGGTGTGCTGCGTCCGGTGTTGAACAACATCACCAGCGGCAAGAGCAAGGAACTGGCCGGTTT CGGTGGCGACGCCGAACTGGGTGGCATGGGCGGTCTGGATGGCGAGTTGTCCAATGACCGTGTCAGCCTGGGCGGCCCGCAAAGCATCCTGCTGCCTAGC CCTACCGAGGGTTATGACGCACAGCTGAACGCAATCAAGAGCTTGGTGGCCGAAGACCCGGGTCGTGTGGCCCAGGTCGTGAAAGAGTGGATTAACACTG
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| DNA Sequence for Gene |
>NB04_RS07570
ATGAATGATCGAGCCATGGTAGCCAAACTCTCCAAAGTCGAGAAAGCTGCGGTATTGCTGCTTTCTCTGGGTGAAACCGACGCGGCCCAGGTGCTCCGGC ACATGGGCCCCAAGGAAGTCCAGAAAGTGGGCGTCGCGATGGCTCAGATGCGCAACGTGCATCGCGAGCAGGTCGAAGAGGTGATGAGCGAATTCGTCGA CATCGTCGGCGATCAGACCAGCCTCGGGGTCGGTTCGGACGGCTACATCCGTAAAATGCTCACCCAGGCACTCGGCGAAGACAAGGCCAACGGCCTGATC GACCGCATCCTGCTGGGCGGCAACACCAGCGGTCTGGACAGCCTCAAATGGATGGAGCCACGCGCTGTCGCCGACGTGATCCGTTTCGAGCACCCACAGA TTCAAGCCATCGTGGTGGCCTATCTTGACGCTGACCAGGCCGGTGAAGTGCTCGGCCACTTCGACCATAAAGTGCGACTGGATATCATCCTGCGTGTGTC CTCGCTCAACACCGTACAGCCAGCCGCGCTCAAAGAGCTTAACCAGATTCTCGAGAAGCAGTTCTCCGGCAACGCCAACACGTCGCGTACTACCCTGGGT GGTATCAAGCGTGCGGCCGACATCATGAACTTCCTCGACAGCTCCATCGAAGGCGCACTCATGGATTCGATTCGCGAGGTCGACGAAGACCTTTCGGTGC AGATCGAAGACCTCATGTTCGTCTTCAACAACCTCTCCGACGTGGACGACCGCGGTATACAGGCGCTGTTGCGCGAAGTGTCTTCGGACGTGCTGGTACT GGCGCTCAAAGGCTCGGACGAGGCAATCAAGGAAAAAATCTTCAAGAACATGTCCAAGCGTGCCGCCGAACTGTTGCGCGACGACCTGGAAGCAAAAGGT CCGGTGCGTGTCAGCGATGTGGAAACCGCCCAGAAAGAAATCCTCACCATTGCGCGTCGTATGGCCGAGGCCGGCGAGATCGTACTCGGTGGCAAGGGTG GCGAGGAAATGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGATTCAGCCGACTCATGTCCAGTTCCAATAAAGAATCGGCCAGCGACCTCATTCGCGCCAAGGACGCCGGGTTACTCGATATCTGGGCATTGCCCAGCT TCGATCCGCACGTGGAACCCGAGCCTGAGCCCGAGCCGGAACCGGTCGACGAGCCGGCGGAAATGGAAGAGGTGCCGCTTGATGAGGTTCAGCCGCTGAC CCTGGAAGAGCTCGAAAGCATCCGCCAGGAAGCCTGGAACGAAGGCTTTGCCACGGGTGAAAAAGAAGGCTTTCACAGTACTCAGCTAAAAGTGCGCCAG GAGGCGGAAGTCGTTCTTGCGGCCAAGGTTGCCAGCCTTGAACAACTGATGGGCCATCTGTTGGCACCTATCGCCGAGCAGGACACACAGATCGAAAAGG CCGTCATTCATCTGGTCGAGCACATCGCGCGGCAGGTTATTCAGCGCGAACTGGTCACTGATTCCGGGCAAATCGCCAGCGTGTTGCGCGATGCGCTCAA
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| Amino Acid Sequence |
>flagellar motor switch protein FliG
MNDRAMVAKLSKVEKAAVLLLSLGETDAAQVLRHMGPKEVQKVGVAMAQMRNVHREQVEEVMSEFVDIVGDQTSLGVGSDGYIRKMLTQALGEDKANGLI DRILLGGNTSGLDSLKWMEPRAVADVIRFEHPQIQAIVVAYLDADQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKELNQILEKQFSGNANTSRTTLG GIKRAADIMNFLDSSIEGALMDSIREVDEDLSVQIEDLMFVFNNLSDVDDRGIQALLREVSSDVLVLALKGSDEAIKEKIFKNMSKRAAELLRDDLEAKG PVRVSDVETAQKEILTIARRMAEAGEIVLGGKGGEEMI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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