Pseudomonas syringae pv. tomato NYS-T1, NB04_RS07460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAAAGCACGCCGATCATGAATGGTCTGAGTTCCGACGCCAAGGCGTTGAGCGAAGACTGGGGACGCTTCATGCGTCGCGAAATCGGTGCCGAAGAGTT TCGTGAACTGGCCAAGCGCGTCGATGGTTTTCTGACGCGTACCGAGAAGGAAAGCCATACGGTTTCCGCGCACCTCAACGATATTCTGCTTGCTCAGGAT TACCAGGACCTCACCGGTCAGGTGATCAAGCGCGTCACGCAACTGGTGACCGAAGTAGAGGGCAATTTGCTCAAGCTGGTGCTCATGGCCAGCCATGTCG ATCGCTTCGCTGGCATCGAACATGACGAAGAATCCATCCTTGCTGAAAAAGATCCTAAAAAACATCTCGACAAGGGTGAAGGTCCGCAGATTCATGCCGA TAAACGTGAAGACGTCGTATCCGGACAGGATGATGTAGACGATCTGCTATCGAGCCTCGGCTTCTAAGGTCTGTTGACGGTTAATTTTAGGGAGCACCCC
|
|
| DNA Sequence for Gene |
>NB04_RS07460
ATGAGCTTCGGCGCCGATGAAGAGATCCTTCAGGATTTTCTGGTAGAGGCCGGCGAAATTCTGGAGCAGTTGTCAGAACAATTGGTCGAGCTGGAAAGCC GACCGGATGATGCTGATCTGCTCAATGCAATTTTTCGCGGTTTTCACACTGTAAAAGGCGGCGCCGGCTTCCTCCAGCTCCATGAGCTGGTGGAGTGCTG CCACATCGCCGAGAACGTGTTCGACATCCTTCGCAAGGGTGAGCGGCGCGTTGATTCCGAACTGATGGATGTGGTCCTGGAAGCTCTGGACACGGTCAAC AGCATGTTCGGTCAGGTACGTGAACGGACTGACGTGACTGCGGCGACGCCGGAACTGCTGGCGGCGCTGGCGCGTCTGGCCGAGCCTCAATCTGCCGACG AGGTTGCCGCTCCCGAGCCTGAACCGGTGGTCGAAGCTGTCGCGCCGGTAGCTGCATCAGCCGCCGCTGGCGATGACATCACCGACGATGAGTTCGAGCA ACTGCTCGACTCGTTGCATGGCTCAAATCCGGTGTCTGTACCTGCAGCTCCGGTTGCAGCAGCCGTTGCAGCGCCTGCCAGTGACGAGATCACCGATCAG GAGTTCGAATCCCTGCTCGACCAGTTGCACGGCAAGGGCAAGTTTGCGGCCGATGTTGCTGCTGCTCCAGCGCCTGCACCTGCTGCCCAGAGCAGCAAGG CTGCGCCCGGCGACGAAATAACCGACGACGAGTTCGAAGCGTTGCTCGATCAGTTGCACGGCAAGGGCTCGTTTGACAGTGCTGTGGCCGCGCCGGTTGC CGCCGCTGTTGCCGCCAAGGCCCCGAGTGCTGCGAAGGCATCTGACGAGATCACCGATCACGAATTCGAAAACCTGCTGGACGAATTGCACGGCAAGGGC AAGTTCGAACCTCAGGCCATCGCTGCCAAGGCGTCTGCACCGGCCCCGGCTGCTGCGCCAGCAGCGGTTGCCCAGCCTGCTCCGGCACCTGTTGCCAAGG CAGAGCCTGCCAAGGCGGCTGCACCTGCCCGGGCGCCTGCGCCTTCCGGCGAAAAACCGGTGGCCACGGAAGCTGAAACCACGGTTCGTGTCGATACCGC CCGACTGGACGAGATCATGAACATGGTCGGCGAACTGGTACTGGTGCGTAACCGTCTGGTGCGTCTGGGTCTGAACAGTGGCGATGAAGCCATGTCCAAG GCGGTTTCCAACCTGGATGTGGTCACTGCGGACCTGCAGACCGCGGTCATGAAGACCCGCATGCAGCCGATCAAGAAAGTCTTTGGTCGCTTCCCGCGTC TGGTACGTGACCTGGCTCGCCAGCTCAAGAAAGAGATCAACCTGGAACTGGTCGGTGAAGAAACCGACCTCGACAAGAACCTCGTAGAGGCGCTAGCCGA CCCGCTGGTCCACTTGGTGCGCAACGCGGTCGACCACGGTATCGAAACGCCGGAAGAACGCGAAGCCTCGGGCAAGTCCCGCGGCGGCAAGGTGATTCTT TCGGCAGAGCAGGAAGGCGACCATATCCTGCTGTCGATTTCCGATGACGGCAAGGGCATGGACCCCAACGTGCTGCGCTCGATTGCGGTCAAACGCGGCG TCATGGACAAGGATGCAGCCGATCGGTTGAGCGACACCGATTGCTATAACCTGATCTTTGCACCGGGCTTCTCGACCAAGACCGAGATTTCCGATGTGTC GGGCCGTGGTGTGGGCATGGACGTGGTGAAAACCAAGATTTCCCAGCTCAACGGTTCGATCAACATCTATTCGACCAAGGGCCAAGGCTCGAAGATCGTC ATCAAGGTGCCGTTGACCCTGGCGATCATGCCGACCCTGATGGTGATGCTGGGCAACCAGGCTTTCGCCTTCCCGCTGGTCAACGTCAACGAAATCTTCC ACCTGAACCTGTCGACTACCAACGTTGTTGACGGCCAGGAAGTGGTGATCGTGCGTGATAAAGCCTTGCCGCTGTTCTATCTCAAGCGCTGGCTGGTCAG TTCGGCGGCTCACGAAGAGCAGCGAGAAGGGCACGTCGTGATTCTTACCGTCGGCACCCAGCGCATCGGCTTTGTCGTCGATCAACTGGTCGGTCAGGAA GAAGTGGTCATCAAACCGCTGGGCAAGATGCTGCAAGGTACGCCGGGCATGTCGGGCGCCACCATCACCGGTGACGGTCGCATCGCCTTGATTCTCGATG TACCCAGCATGCTCAAGCGTTACGCCGCTCGGCGTATTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATCCGGGGTTGCGGGCAGCCTGGCTGCCTGCAACACCTATTGGAGTGTTTATGGCAGTCAAGGTCCTGGTGGTGGATGATTCCGGTTTTTTCCGCCGCCG TGTCACGGAAATTCTTTCTTCGGACCCCAACATTGTAGTTGTCGGCACCGCCACCAACGGCAAGGAAGCGATCGAGCAGGCGCTGGCCCTCAAGCCTGAC GTCATCACCATGGACTACGAAATGCCGATGATGGATGGCATTACCGCAGTTCGTCACATCATGCAGCGTATTCCCACCCCGGTATTGATGTTCTCGTCGC TGACGCATGAAGGTGCGCGCGTGACGCTGGATGCTCTGGACGCCGGTGCAGTGGATTTCCTGCCCAAGAATTTCGAAGATATCTCGCGCAACCCGCAGAA GGTCAAGCAACTGCTGTGCGAGAAAATCAACAGCATTTCGCGCAGTAACCGCCGTTCGAGCGGCATTGGTTCGGCCAGCGCTGCATCGCCAGCCCCGGCT
|
|
| Amino Acid Sequence |
>chemotaxis protein CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLHELVECCHIAENVFDILRKGERRVDSELMDVVLEALDTVN SMFGQVRERTDVTAATPELLAALARLAEPQSADEVAAPEPEPVVEAVAPVAASAAAGDDITDDEFEQLLDSLHGSNPVSVPAAPVAAAVAAPASDEITDQ EFESLLDQLHGKGKFAADVAAAPAPAPAAQSSKAAPGDEITDDEFEALLDQLHGKGSFDSAVAAPVAAAVAAKAPSAAKASDEITDHEFENLLDELHGKG KFEPQAIAAKASAPAPAAAPAAVAQPAPAPVAKAEPAKAAAPARAPAPSGEKPVATEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSK AVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGIETPEEREASGKSRGGKVIL SAEQEGDHILLSISDDGKGMDPNVLRSIAVKRGVMDKDAADRLSDTDCYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIYSTKGQGSKIV IKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLNLSTTNVVDGQEVVIVRDKALPLFYLKRWLVSSAAHEEQREGHVVILTVGTQRIGFVVDQLVGQE EVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARRI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|