Pseudomonas syringae pv. tomato NYS-T1, NB04_RS05620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACAGCGCCGCGCCGTTCGTCTGTATTAATTTACAGACCTTCGTCGCAAGCTTCTGCCTTGCCCGGCCACACAGCCGGGCTGTCGGCAGTTACAGCTT TGCTGTTTTGCGTTAGCTAGATTGATTGACCTGTCCAGGCCGCAGATGCGACTCAGACAACCAGTCAAGCACGTCCAGCCTGTTTACAGGTAGCGTCAGC CATGCCCACTCGGGCAGCAATTGGCTGATGACAAGACGAGTATGCCTTGATGACTTCGCAAGAAGCTCAGCCAAGGCAGCGTCTCTCGCCCTATCCGAAT GAATGTCGTCAACGCCCACAGCCTGATGATCGATTCGCAAAAGTCATGCACCCGCTTTTTTTCAGCTTTCAGCACCGACCTTCGGATGCAAAGACGTGCC CGCTTATTGCTGTCGTCATACCAAAAGACGGCTGACAGGCTGACGGAACGCTCGTAGAGTCACTCGATATTTTCGCGACACGCTTGATGATGAGAACGCC
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| DNA Sequence for Gene |
>NB04_RS05620
ATGGCCGGGCTGATCCCCCAGAGCTTTATCGACGACCTTCTGAACCGCACCGACATTGTCGATGTCGTCAGCTCGCGCGTGCAGCTCAAAAAAGCCGGCA AAAACTACAGCGCGTGCTGCCCGTTTCACAAAGAGAAGACACCCTCTTTCAGCGTCAGCCCGGACAAACAGTTCTATTACTGCTTTGGCTGCGGCGCAGG CGGCAACGCACTGGGTTTCATCATGGACCACGACAACCTGGATTTCCCCCAGGCCGTCGAGGACCTTGCCAAAGCCGCCGGCATGGAAGTGCCACGCGAG CAAGGCGTCAAGGGTCAGAAACCCCGTCAGCCGACCGACTCACCGCTTTACCCGCTCCTTAACGCTGCCTCCGAGTTTTACCGCCAGGCACTGAAAAGCC ATCCGTCGCGCAAAGCCGCAGTGGATTACCTCAAGGGCCGCGGCCTGTCCGGTGAAATCGCCCGGGACTTCGGCCTGGGCTTTGCACCACCCGGCTGGGA CAACCTGTACAAGCACCTGAGCAGCGACTCGCTACAGCAAAAGGTCATGATAGATGCCGGCCTGCTGATCGAAAACGCTGAAACCGGCAAGCGCTACGAC CGCTTCCGTGACCGGGTGATGTTTCCGATCCGTGACTCGCGCGGGCGCATCATCGCCTTCGGCGGTCGCGTATTGGGCGACGACAAGCCCAAGTACCTGA ACTCGCCGGAAACGCCCGTATTCCACAAGGGTCAGGAGCTGTACGGGCTGTTTGAAGCACGCAAATTCAATCGCAACCTCGATGAAATCATCGTCGTTGA AGGTTACATGGACGTCATCGCTCTGGCCCAGCAAGGCTTGCGCAATGCCGTGGCCACGCTGGGCACGGCCACCAGCGAAGAACACTTGAAACGTTTGTTC AGGGTCGTGCCGAACGTGTTGTTCTGCTTCGACGGCGATCAGGCCGGACGCAACGCCGCATGGCGAGCGCTGGAGGCCGCGCTGCCAAACCTGCAGGACG GAAGGCGGGCCCGCTTCCTGTTTCTGCCCGAAGGCGAAGACCCGGACACGCTGGTGCGCTCGGAAGGCACCGACGCCTTCAAGGCGCGCATCAATCAGCA CGCCCAGCCGCTGGCCGATTATTTTTTCGAGCAACTGACCAAAGAATCCGACCCGCGCTCGCTGGAAGGCAAAGCGCACATGGCAACCCTCGCCGCGCCA CTGATCGACAAAGTGCCCGGCGCGAACCTGCGGATTCTGATGCGTCAGCGCCTCAGTGAAATTACCGGGCTCACCGGCGAGGCCGTCAGCCAACTGGTGC AGAGCGCACCCGCAGACGCGCCGCCGAGCTACGACCCGTATGTCGATTACGACGCCATGCCCGACTTCGCCGATTACCAGCCACAAGGCGGGTACGAGGC GCAGCAGGAATGGACGCCAAAGAAAGCCGGCGGTCCGAATCAGAAAAAATGGGACAACAACAAGTCCTGGGGCAAGAAAGGCAAGCGTCAGGAGTTCGAA CCCCGCACACCGCGTGTACCGACCGCCGTCGAGCCGCCAATGCAGGCCGCATTGAGAACCTTGCTGCACCACCCGGAACTGGCCGAAAAGGTCGAAAATG CCAGCCATTTCGCTGCAGAAGACCAATCAAACGCACAACTGCTGGTCGCCCTTATCGAAGCCCGGCAAAAGAATCCCAGCCTGCGGTCGTTACAGTTGAT AGCGCGATGGCACGGAACTGAACAGGGCCGCTTGCTGCGTGCACTGGCAGAAAAGGAATGGCTGATTGAGACCGACAACCTTGAACAACAGTTTTTCGAC ACTATAACTAGCTTATCCGCCCGCCAACGCGAGCGCAGCCTGGACCATCTGATCAGCAAGGCTCGGCAGACCGAGCTGAGCGCAGAAGAGAAAATTCAGC TAAGGGAACTGCTAAATCGCAATGTTCCCGCACAAAACCCGACCTCAACTGGCGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCATAGCTCGGGTATAATCCTCGGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAGTCTCGTATC AAAGAGTTGATCACCCTGGGTCGTGAGCAGAAGTATCTGACTTACGCAGAGGTCAACGACCACCTGCCCGAGGATATTTCAGATCCCGAGCAGGTGGAAG ACATCATCCGCATGATCAACGACATGGGGATCCCGGTACACGAGAGTGCTCCGGATGCGGACGCCTTGATGCTGGCCGACGCCGATACCGACGAGGCAGC CGCAGAAGAAGCGGCTGCAGCGTTGGCAGCGGTCGAGACCGATATCGGGCGTACCACCGATCCCGTTCGTATGTACATGCGTGAAATGGGCACCGTTGAA CTTCTGACCCGTGAAGGCGAAATCGAAATCGCCAAACGTATCGAAGAAGGCATCCGTGAAGTGATGGGCGCAATTGCGCACTTCCCAGGCACGGTTGACC
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| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYSACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPRE QGVKGQKPRQPTDSPLYPLLNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYD RFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF RVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAP LIDKVPGANLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQQEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFE PRTPRVPTAVEPPMQAALRTLLHHPELAEKVENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKEWLIETDNLEQQFFD TITSLSARQRERSLDHLISKARQTELSAEEKIQLRELLNRNVPAQNPTSTGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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