Pseudomonas syringae pv. tomato NYS-T1, NB04_RS04130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACAACCTGCGTCAGAACTCGCGTGCATTGGGGCTGGGCGTTCGTCGCCTGGGGATTTTCACCAGCATCGTGCTGTTCGACCAGCGAGTGTCGATGTGG ACCTCGATTCTCGGCCTGACCGTCGCCATCATCGCCAGCTTCAAGTACGGCGGCGCGTTCCTGCTGATGTACCTGCTGTGGATCGGCATGACCCGCCTGA TCCTCACCCTGCTGCTGTCCTTGTCAGGGCACAGGATCGGGCCTGCCTACCCGATGATTCTCTATTACAACCAGATCGTCGGCGCCCTGATGAAGATCTA CGTCTTCTTCCGCCTGGACCGCCAGTCCTGGACGCGCCAGGACACCAAACTCAGCCGCGACATGGCCAGCTTTCAAGGCTGGTTCAACACGTGGTCGTCC CGAACCATGACTTTCTCGGCTGGCACCATCTTCGTCGCCGTGCTGTTGACGATGGTTTGACCAGACCAACGGATTAATCGCTTAAGTAGGAAAACTAGCC
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| DNA Sequence for Gene |
>NB04_RS04130
ATGAATACAGCCGTGAATGCGAACGTCGTACATGAATCCGAAGCCCAGCGCCAACACGCCCGGATCAAGATCCCTGCCAAGCTGCGCCTGCTGAACGACA AGCCGAACGCGCCGCTGGTGCGTATCGAAGACCTGTCGGCCGGCGGCTTGAGCTTTGTGGCTCCAGCGGGGCTTGCCTACACCACCGGTGAGGTCATCAA GGGCCGCCTGCAATTTCTGATCGACAACCTTGGCCTGGCCATGGATGTAGAAATGCAGGTGCGCTCGGTGGATACCGCCAGCGGCCGTGTTGGCTGCCAG TTCCAGAACCTGGAAGCTCAGGACATTGCCACCCTGCGCCACTTGATCACCTCGCACCTGTCTGGCGAAATCGTCAGCCTGGGTGAAGTGCTCGCCACCT TGCAGCGCGACAATTTCACCAAGGCTCGCAAGGTCAAAGGCAGCGACAGCGGCATGAGCGCACTGGGTCGTTTGCGTGCGGTCACGTTCAGCCTCGGCAT CTTTATTGTCGGCCTGGCAGCGTTCGGCTTCATCTTCAAGACGGTCTACGGCCTGTACTTTGTCAGCCATGCGTCGGCGGGTCTGGTCTCGATCCCGAGC ATGGACGTGACCATGCCGCGTGAAGGCACCTTGCAAAGCCTGGTCGCCCAGAACGGCGAAGCTACCAAAGGCGCGCCACTGGCGACCTTCAACACCAGCA TGCTGGAAATGCTCAAGGGCAGCCTGACCGGTGAAGACCTGCAGCCGGCAAAGATCGAAGAGCTGTATGGCAAGCAAATGAGCGGCACCATGACCAGCCC GTGCGATTGCGTCGTGGCTCGCCAGCTGGTTGCCGACGGTCAGTTCGCGTCCAAAGGTCAGGTGATCTTCCAACTGGTGCCACGCAATGCGCCGGCCACG GTTGAAGCACGCTTTACCTATCGCCAGTTCAACGACGTCAAGCCAGGCACCCGTGTCAGCTTCCAGATCGCCGGCGAAGACAAACTGCGCACCGGTCAGA TCGTCAGCAGCACCAACCTGAGCGACACCGACCTGTCCACCGACATTCGCGTGCAGATCAAGCCAGACGAAAGCCTGAGCAGCTCGCTTGCCGGTCGCCC TGTCGAAGTGGTCAGTGATCGCGGTCCGTCCGTAAACTGGTTGCTCGACAAAGCAATGGCTGCGGGTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATGAACAGCCCACTACGACGCCTGTCGACCCCCACGCTATTGAGCCTCGCTGTCGCGCTCGGCCTCAGCGGCTGTGCCGGCCTGCCTGATCAACGCCT TGCCAATGAAGCCCTGAAAAACGGCGACACTGCATTGGCGGAGCAGAACTATCGGCAGCTGGCGGACCTGGGCTACAGCGACGCGCAAGTCGGCCTGGCC GATATTCAGGTGAATACCCGCGACCCGGCTCTGCTCAAGCAGGCCGAGGCCACTTACCGCGCCGCCGCACAGACTTCGCCACGGGCACAGTCGCGCCTCG GTCGCCTGCTGGCGGTCAAGCCCGATGCCACTGAGGCCGAGCATCGCGAAGCCGAAGAGCTGCTGAAAAAAGCCTTCGCCAACGGTGAGTCGGGCACGCT GATACCGCTGGCCATGCTGTATCTGCAATACCCGCATACCTTTCCCGAAGTGAATGCGCAGCAGAAAATCAGCCAGTGGCGCGCTGCCGGCTATCCAGAA
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| Amino Acid Sequence |
>alginate biosynthesis protein Alg44
MNTAVNANVVHESEAQRQHARIKIPAKLRLLNDKPNAPLVRIEDLSAGGLSFVAPAGLAYTTGEVIKGRLQFLIDNLGLAMDVEMQVRSVDTASGRVGCQ FQNLEAQDIATLRHLITSHLSGEIVSLGEVLATLQRDNFTKARKVKGSDSGMSALGRLRAVTFSLGIFIVGLAAFGFIFKTVYGLYFVSHASAGLVSIPS MDVTMPREGTLQSLVAQNGEATKGAPLATFNTSMLEMLKGSLTGEDLQPAKIEELYGKQMSGTMTSPCDCVVARQLVADGQFASKGQVIFQLVPRNAPAT VEARFTYRQFNDVKPGTRVSFQIAGEDKLRTGQIVSSTNLSDTDLSTDIRVQIKPDESLSSSLAGRPVEVVSDRGPSVNWLLDKAMAAGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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