Pseudomonas syringae pv. tomato NYS-T1, NB04_RS01475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 duf2_2 IPR001633 EAL domain 1018 1264 1.1E-126
SMART SM00091 pas_2 IPR000014 PAS domain 449 519 1.8
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1018 1274 5.1E-108
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 838 1009 5.2E-45
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 845 1014 4.1E-61
SMART SM00091 pas_2 IPR000014 PAS domain 718 784 4.5E-7
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1019 1273 1.8E-103
Gene3D G3DSA:3.30.450.20 PAS domain - - 580 720 3.5E-23
CDD cd00130 PAS IPR000014 PAS domain 591 707 4.78405E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 567 708 1.59E-18
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 578 717 1.6E-13
Pfam PF13426 PAS domain IPR000014 PAS domain 468 569 0.66
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 843 1004 6.8E-51
Gene3D G3DSA:3.30.450.20 PAS domain - - 442 568 1.7E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 722 838 1.9E-17
SMART SM00091 pas_2 IPR000014 PAS domain 324 387 100.0
CDD cd00130 PAS IPR000014 PAS domain 727 829 1.17568E-11
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 718 1269 0.0
Pfam PF00563 EAL domain IPR001633 EAL domain 1024 1259 1.5E-77
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 707 830 8.72E-23
Pfam PF13426 PAS domain IPR000014 PAS domain 730 831 5.6E-15
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 446 575 6.3E-6
SMART SM00086 pac_2 IPR001610 PAC motif 527 570 1.1
CDD cd01949 GGDEF IPR000160 GGDEF domain 844 1006 3.88962E-62
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 848 1009 8.04E-50
Pfam PF00989 PAS fold IPR013767 PAS fold 583 707 5.1E-8
CDD cd01948 EAL IPR001633 EAL domain 1024 1264 3.62216E-116
SMART SM00091 pas_2 IPR000014 PAS domain 582 648 0.0089
Gene3D G3DSA:3.30.450.20 PAS domain - - 721 844 2.5E-28
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 840 1006 4.5E-41
SMART SM00086 pac_2 IPR001610 PAC motif 668 710 1.1E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 434 568 2.27E-12
SMART SM00086 pac_2 IPR001610 PAC motif 790 832 5.9E-8
SMART SM00267 duf1_3 IPR000160 GGDEF domain 832 1008 5.4E-69
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1023 1270 1.83E-93
Gene3D G3DSA:3.30.450.20 PAS domain - - 277 441 1.7E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.