Pseudomonas syringae pv. tomato NYS-T1, NB04_RS01315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTTCAATCGGACATGGCCAAGGTCGGGATCAAGATAGACATTCGCATCATGGAATGGGGCGAAATGCTCAAGCGCGCCAAAAATGGCGAACATGACA TGGTGTTTGCAGGGTGGGCTGGCGACAATGGCGATCCGGATAACTTCCTGACCCCCAACCTGAGCTGCGACGCGGCCAAAAATGGCGAGAATTATGCCCG CTGGTGCAACAAGGCGTTCGAGGACGCAATCACTCAAGCCCGGAAAATAACCGAACCAGCGGAACGTGCCGCCCTCTATAAGCAGGCTCAACAAGTGTTC AATCACGAACAGCCCTGGATCAGCCTGGCTTACCCGAAACTGTTCGTTGCAATGCGCAAAGATGTCGAAGGCTTTCAAATAAGCCCTCTGACCAATAACA ACTTCACCACTACCAGGGTGAAGTAGAAAAACAATCCGGCGAGCTCATAACCCGAGACTCGCCGGAGTACGCCTAACCGGCTGATGAGGTACACACCAAG
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| DNA Sequence for Gene |
>NB04_RS01315
ATGTTTAGTTTTATCGCCCGCCGAGTGGGGTTGCTGATACCCACTTTCTTCGGCATCACCTTGTTGACGTTCGCGCTGATTCGTCTGATTCCGGGCGACC CGGTCGAAGTCATGATGGGTGAACGCCGGGTCGATCCGGAAATGCACGCTCAGGCCATGGAACGTCTTGGCCTGAACAAACCGCTGTATGCCCAGTACAT CGATTACATCGGCAAGCTCGCCCAGGGCGATCTCGGTGAATCGCTGCGTACGCGCACCAGCGTCTGGAGCGAATTCACCTCGCTGTTCCCGGCAACCCTG GAGTTGTCGCTGGCAGCACTGATTTTCGCAGGCATCCTCGGCTTGCTGGCCGGCGTCATCGCCGCACTCAAGCGAGGGTCCCTGTTCGATCATGGGGTCA TGGGGATTTCCCTGGCCGGCTATTCCATGCCGATCTTCTGGTGGGGCCTGATCCTCATCATGTTCTTCTCGGTAACCCTGGGCTGGACCCCGGTTTCCGG GCGCATCGACCTGTTGTACGACATCCCGCCAGTCACCGGTTTCATGCTGATCGACACCCTGCTCAGTGACGAGCAAGGCGCGTTTCTCGATGCACTGCAT CACCTGATTCTTCCGGCCATCGTGCTGGGCACCATCCCGCTGGCGGTAATCGCCCGGATGACCCGCTCCTCGATGCTTGAAGTGCTGCGTGAAGACTACG TGCGTACCGCCCGGGCCAAAGGCCTGTCACCTGCTCGTGTAGTGTTCGTGCACGGCCTGCGCAACGCGCTGATTCCAGTGCTGACCGTGTTCGGCCTGCA AGTCGGTGCTCTGCTGGCCGGTGCGGTCCTGACCGAAACGATCTTCTCCTGGCCGGGTATCGGCAAGTGGCTGATCGAAGCCATCGGCGCACGGGACTAT CCGGTCGTGCAAAACGGCATTCTGCTGATCGCCTGTCTGGTGATCCTGGTCAACTTCGTGGTGGATATCCTCTACGGCTTTGCCAACCCACGCATTCGTC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCATCGATATGAGCACCCCTACTCCTGCGGTAGCAGTCGATCAAAGCCTGCTTTACCCATCCCCGTACAAAGAATTCTGGCAAGCGTTCTCCAGGAAC AAAGGCGCGGTTGCCGGCCTGCTGTTCATGATCCTGATCGTGTTCTGCGCCCTGTTTGCCCCTTGGGTTGCGCCACATGACCCGAGCGAGCAATACCGTG ACTTCCTGCTGACCCCTCCGGTGTGGCTCGAAGGCGGTCAATGGCAGTTCCTGCTCGGCACCGACGAACTGGGCCGCGATCTGCTGTCGCGCCTGATTCA GGGCTCGCGCCTGTCGCTGCTGATCGGTCTGGCATCGGTGGTCATGTCGCTGATCCCCGGCATCCTGCTCGGCCTGCTGGCGGGTTTCTTCCCGCGCGTG CTTGGCCCGTCGGTCATGCGCCTGATGGACATCATGCTGGCCCTGCCGTCGCTGCTGCTGGCGGTGGCCATCGTGGCCATTCTCGGCCCTGGCCTGATCA
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATL ELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGAFLDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGALLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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