Pseudomonas syringae pv. syringae B301D, PSYRB_RS26205

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae B301D, complete genome. [Details]
DNA Sequence Upstream of Gene
TTTAATGGCGTTAGTCGCGACTTATAAGCAGTTTAAGGTGGGGCTTGGCATGTCGTTACTGATCAGTTGTATGCCGCTAGTTCTCTGCACGATTATCTAT TCGCTATTATGTGTATGGCGGAGTCCTAGAAAGTCTCTGGTCGTGCGCTCGCAGCGCGTCGAAGTCGTTGAGCCAAAGCAGGAGAATCGTTGGGCACTCG GCGCTGTTGGGGGCGGCCTGGGAATATTGATTTATCCAGTTTTCCACGCTTACAGATCGCCAGCGATGCTGCTCGTCTTTCTATTTATAGTTATTGCCCT ATTTATGCTGTTTTACCATCGCACCAGTATCTCATCCCTGCGTAATTTGAAGGATCAAGAGGCGCGAGAACATCAGGAATACACATTCATGAATGTGGAA GAGCTTCGTTCAAGGCGCGCGGCGTCTTGGATTGGCCGCATTTTCGCTACCAAGGTAGACCGATGAGTTTTGCCAGTAACCAGTTTTCAAGGAGCGCACA
DNA Sequence for Gene
>PSYRB_RS26205
ATGTTGACGGACCTTCTTTCCATGCTGAGCCCGCAGAATAAAAGGCTTTTCAAGCTAAATACATTTGCGTCCGGCGGTGAAGAGGAAATGCTGCTGGAGC ATTTTTCTGGTTCAGAAGGCCTCTCCCGGCTTTTTGAGCTGGATTTGGCGCTGCTAAGCCAGCGCTCCGATGTTAAACTAAAATCACTCATTGGCCGCCC CGCGACCGTGGAAATCGAACTTGCCGATGGTTCTAAACGCTACATCAACGGCTACGTGAACCGATTCAGTACTCAAGGTAGCGATGGTGGGCTTTCTCGC TACAGTGCGGTGCTTGGGCCGTGGTTATGGATGCTTACCTGTCGATTTGACACGCGAATATTTCAAGATAAAACAGTTCAAGATGTGTTGACTGAGGTAT TTGGCAGCTATGGAGCATTTCCAAAATTTGAATTTCGCCTGAGCAAGTCCTTAAAAAATCATAGTTATGTCACCCAGTACCGCGAGAGTGACTTTAACTT TGTACAGAGACTACTTGAAAATGAGGGGCTTTTTTACTATTTCGAGCACACTGCCGACTCGCACGTGATGGTTTTGGTTGATGACTCCAGCACATTAGTA CCTTTGGCGGAGCAGCCACAGATTCGTTTTCATACAGCCTCAGTGACCGAGACAGCTGACTCGATTACCCAATGGAGTGCGACACGCCAACTGCAGTCTG GCAAAGTTTCCGTACGTACCTTTGATTACCGCCAGCCAAATAATGCGCTGCCAGTCACCATGCAGAGTATGAATCAGCAGGGAGACATCGATAGCTTCGA GATATACGATTTCCCTGGGCAGTATACTCATGGAAACTATGAGGATGGTGAGGCAATGGTCCGTAACCGGATTGAGGCCTTGGAGTTATTGGGTAAAACA TTTTATGGCGATAGCAACTGTCGTGTCATGAAGCCGGGCTATACGTTCGAGCTGACCCAGCACTATGAGCACGATGCTGGAACCGCTGAGAACCGGCAGT TCTTAATTATATCGGTTGACCATGTAGGTAGTAATAACTACTTGACTGGTGATCAGGCCGGTTACCTCAACAAATTTGTATGTGTTCGCAAAAAAATTGC TTATCGGCCTCAGTTAGCAACTCGCAAACCCTCAATTAACGGCCCACAAACCGCCATTATCGTTGGCCCCCCCGGTGAGGAGATCTACACCGATGAAATG GGCCGCGTGAAAGTGCAGTTCCACTGGGATCGCAACGGCCAGTTCGACGACAAAAGCTCTTGCTGGGTACGCGTCGCCCAGTCCGGTGCAAGTGGCGGCT TCGGCAGTATTCAGATACCCCGTGTCGGCGACGAAGTCGTCGTTGTATTTCTTGACGGCAACCCTGACCGTCCGCTGATCATGGGCAGCCTCTACAACAG CCAGAATACCCCGCCATGGTCGCTTCCGGCGAACAAGACTCAGAGTGGTTTCTTGACCCGGTCGATGAAGGGCGACGGCGGTACGGCGAATTTCTTCCGG TTCGAAGACAAGGCCGGCGCCGAGCAACTCATCATGCACGCTGAGCGCAACATGGATACCGAGATCGAGCTCGACGAAACCCATAAAGTCGGCAACAACC GCACGATGACTGTCGATGGCAGGCAAACCGAGATCATCAAGAAAGACACTATGATGAACGTTCAGGAAGGCTCACTGACGATTCAGGTGGATAACCAGTT CATCCAGGTCAACGCCAAGCAACACATCATTCTCCAAGTGGGGGAAAGCAGCATCACCCTCACGCCGGATGGCATTGAGATCAAGGGCAACGCCATTACC ACAGTGAGCAAGGGTACGACTCAAATAACCGGTGCGCCGGTCAGAGTCAATGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGTAAAGGGCTGTTAACGCTGATATAGAAGTGACCCATCTGCCGACTTGGCGATGCTCCATAAGTATTCAGTCTCAAATCAGACCTGCTAGCGCTGTATG AAGTAGAAGTTTGGGTCAGCGAAGCTTCGGCAGTAGGGTCAATTCTGTATCAGCGGCAGCGAGCTGCGGTCTGGCGCTTACGTCGTGCACATTAACCCGA ATCAGTTGCCCAGCAGAGCAGCCGGGTGTTTTGCCGGATAGGACGTGCAGCAGAGCTAGAACCTGCCCTCGTTTCGCTGATTGGGTCGACTCACCTGTCG CCGCCTTGAGGGATTGCTGCCGCTGAACCTCACAGCGACAGCTCACAGAGGCCTTCGGCTATATGGCTACCGGGGGCGGTGCAATGACGATAGAGGGGCG TCGACCGCATGACCTGCTGCCATGTCAGCAATCGGTTGTCATGAGCCCAAGGCCAAGGACGAGAATAGTCTAACTGACAAAAGACAGGGAAATGAGCATC
Amino Acid Sequence
>type IV secretion protein Rhs
MLTDLLSMLSPQNKRLFKLNTFASGGEEEMLLEHFSGSEGLSRLFELDLALLSQRSDVKLKSLIGRPATVEIELADGSKRYINGYVNRFSTQGSDGGLSR YSAVLGPWLWMLTCRFDTRIFQDKTVQDVLTEVFGSYGAFPKFEFRLSKSLKNHSYVTQYRESDFNFVQRLLENEGLFYYFEHTADSHVMVLVDDSSTLV PLAEQPQIRFHTASVTETADSITQWSATRQLQSGKVSVRTFDYRQPNNALPVTMQSMNQQGDIDSFEIYDFPGQYTHGNYEDGEAMVRNRIEALELLGKT FYGDSNCRVMKPGYTFELTQHYEHDAGTAENRQFLIISVDHVGSNNYLTGDQAGYLNKFVCVRKKIAYRPQLATRKPSINGPQTAIIVGPPGEEIYTDEM GRVKVQFHWDRNGQFDDKSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSQNTPPWSLPANKTQSGFLTRSMKGDGGTANFFR FEDKAGAEQLIMHAERNMDTEIELDETHKVGNNRTMTVDGRQTEIIKKDTMMNVQEGSLTIQVDNQFIQVNAKQHIILQVGESSITLTPDGIEIKGNAIT TVSKGTTQITGAPVRVND
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site