Pseudomonas syringae pv. syringae B301D, PSYRB_RS23405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 51 269 9.31E-32
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 59 268 4.4E-23
Coils Coil Coil - - 307 331 -
Pfam PF08448 PAS fold IPR013656 PAS fold-4 339 447 5.2E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 337 449 7.3E-13
SMART SM00091 pas_2 IPR000014 PAS domain 332 398 2.9E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 344 454 7.2E-22
Gene3D G3DSA:1.20.5.1930 - - - 443 525 6.1E-10
Coils Coil Coil - - 445 465 -
CDD cd01007 PBP2_BvgS_HisK_like - - 48 268 8.50324E-41
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 575 660 6.09002E-28
Gene3D G3DSA:3.30.450.20 PAS domain - - 321 442 1.9E-21
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 219 662 1.6E-57
Gene3D G3DSA:3.40.190.10 - - - 41 267 1.1E-40
CDD cd00130 PAS IPR000014 PAS domain 351 442 2.60241E-7
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 534 662 1.6E-28
Gene3D G3DSA:3.40.190.10 - - - 135 230 1.1E-40
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 542 662 2.88E-18
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 570 663 3.8E-6
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 50 269 2.9E-16
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 466 532 2.3E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.