Pseudomonas syringae pv. syringae B301D, PSYRB_RS16850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B301D, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAACTGGCTGTCGACGACCATTTGTTCTTCGTTGCTCTCGCGGATGACGAGGTGGTCGGCACACTCCTTGCCGGCTATGACGGGCATCGCGGCTGGCTG TATTCGGTCGCCGTCGATCCGCAACAGCGCGGCAACGGCCTGGGCACCCGGCTGGTCAGGCACGCAGAAAAGTCGCTTGCGGATCTCGGCTGCGTGAAGA TCAACCTGCAGATCCATACCTTCAATGAAAGCGTGCAGGCCTTCTATAAAACCCTGGGCCATACGCCTGAGCTCATTATCAGCATGGGCAAGCGGATCGA TGCCAACGTAACGGCTCAGTCCTGAGCTGTCTGCCGAGGCGACCGAAACCATCGGGCGCCTCAATCATTTATTTACATGAGAATTAATATCAAATTACAA TTATTGCTATTAACGTCCTAGCAGAGCATCTCCCTTGAGCACTTCCTTCCAATGCCCTCGCCGTCCCGGCTCTTTTCTGCTGTCCGCGCTTTCTCTGGCG
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| DNA Sequence for Gene |
>PSYRB_RS16850
ATGTTCTCCGGCGGCGCAGTGCATGCTGCCGAAACCGCAACGCTGCCCGCTACGCAGGTGTCGGCAACCGCGACCGAAGCGCAGGAAGGCTACAGCGCCA AAAGCGCCAGCACTGCGAGCAAGAGTGACGTACCGCTCAAGGAAGAAGCGCAGTCGGTCAACGTGGTGACACCGCAAACCATCGCCGACTACAACGTGCG CTCGCTGGACGATGCCATGAAGTTTGTCAGTGGTGTCAGCCAGGGCAATACCCTTGGCAATACCAAGGACTCGCTGGTCAAGCGCGGCTTTGGCACCAAC GATGATGGCTCGGTGCTGCGTGACGGCGTGCGCTCGGTGGTGTCGAAAAATTTCGGTGCCACTACCGAACGCGTTGAAGTGCTCAAAGGCCCGGCCTCGC TGCTGTACGGGGCGATGGAGCCGGGTGGCGTGATCAATGTGATCAGCAAACAGCCGCAATACGTGCAAAGCACCACGCTCAGTGGCTCGGCGTACAGCGA AGGCGGCGGCAGCTTCGGCATCGACACCACCGGCCCGCTGGGTGACTCGGGGCTGGCCTACCGCCTGGTGGCCGAGCGTCAGAGCGAGGACTACTGGCGT AACTATGGCGTTGACCAGCACACGCTGGTCGCGCCGTCGCTGTCCTGGACCGGGGAGCGCGCCAGCCTGACGCTGGCTTACGAGTACAACGATTACGTCA GCCCGTTCGATCGTGGCACGGTGTTCACCGGCGGTCATCCGGCCGATATCAGCTACGACAAGCGCCTGGACGAAAAATGGGCAAATACGGTCGGCATCAG CGAAACCGCTACCGCACGCTTCGAGTACCAGCTCAGCGATGACTGGAAAACCCGCCTGACCTACGGCTGGAACAACGACCGCTACAGCCTCTCGATTGCC CAGCCGAGCACGCTGTCCAGCAGCGGCGTGCTGCGACGCCAGGCCAATGGCGGCCATTACGATTATGAAACGCGTTATGCCAGCTGGGACTTCATCGGCA AGCAGGAGGTGTTTGGCCAGCAACATGATCTGCTGATCGGTGCCGAGCAGGAGGATTCCGACAAGTACCGCGGCAAGACTTACCGCAATGGCGTACAGGG TGGCTTCAATATCTTTTCGCCCAGCTACGGCAGCCTGGCGGAGCCCAGTGTTGTCAGTACGACCACCAGCAACCTGAGCAATCAACTGACCTCATCGTCC ATCTACCTCAAGGACAACTGGCATCTTGATGACCGCTGGATTCTGGTCCTGGGCGGCCGCTATCAGCATTATGACCAGCACATCGCCCAAGGCCTCGGCG CCAGCCGCAACACTAATCTGAACAAAAATGACGATATATTCCTGCCGATGGCGGGACTGGTATTCAAGGTCAATGAGGACCTGTCGTTGTACGGCAACTA CAGCCGCTCTTTCGTCCCCAATGAGGCGGTTAACGATGACGGCACCACCTTCGACCCGGAAGAAGGCCGCAGCTACGAAGTCGGCGCCAAATATGCGCTG GCACCGGAACTCGACTTCAACCTCGCCGTGTTTGACATAGAGAAGAAAAATGTTGTGACCACCGTTGCTACCGGCGTCAGCGAAGCGGCTGGCAAAGTGG GTTCACAGGGCGTGGAGCTGGACGTGACCGGTCGAATTGCCGAGCGCTGGGACATGATCGGCACTTATGCCTACACACATACCGAAGTGCTTGATGACCC CAAAAACGAGGGCAACCGTTTGAGTCAGGCACCGAAACATACCGCCAGCCTGTATCTCACCCATCACCTGCAAGTCCCGTCCGGTCTGGGCGAATGGCAT GCCGGTGGTGGCGCGCGCTATGTCGGCGATAGGGCGGGTGACAACGCAAACACGTTCTACATGAGCAGCTACACCGTGGCTGATGCGTTCCTGCGCTGGG ATGTGCCAATGGCAGGTTATAAAACCCGCCTTCAATTGAACGTGGATAACCTGTTCGACAAGCAGTACTACCCGTCCAGTACCGACAGCCCGTTGCAGGT CAATGTGGGTGAACCACGCACCGCACGCCTGAGCGCCAGCGTCACGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGGTTGCCACGAAGCAGGCCTGCGCGGGCTTGCTCCGTGGGCAATCAAACGGATGAATCAGAACTTCATTCGGTAAAAACTGATCAGCGCTTCATTGCC ATACAGGTATTCGAACCTGCCGATGAATGCGCTCTTCTCCAGCCACTCGTTAGGGCCCAGAGCGACCTGAAAGCGTGGTGTGCAAGTGCACTGGTAATGG CCTTCGCTGATTGGCCATAGCCCGTTCTGAAGTTCGTGCTGGCCCGTTTCGTCAACGAGCAGAGCACCCCTGCTTTCAACGTTGATCATTTCGCCCAACT GGGTGACCAGCGTGAAACGGGTTTCGAGAAAGGCAAGCTCGGATGACAACTCAACCAGCGTATTGCTGCCGCCGGAGAGTACCGAGCCGCTGAAGTTTTC GCCGTAAAACTCCCCGCCCACTACATTGCTGTTGCTACGCAGTCCGTCGCTGCATATCCCCATGAGCACAGGCGCGTCGGTCTTCAGAATCACGGTCAGC
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| Amino Acid Sequence |
>ligand-gated channel
MFSGGAVHAAETATLPATQVSATATEAQEGYSAKSASTASKSDVPLKEEAQSVNVVTPQTIADYNVRSLDDAMKFVSGVSQGNTLGNTKDSLVKRGFGTN DDGSVLRDGVRSVVSKNFGATTERVEVLKGPASLLYGAMEPGGVINVISKQPQYVQSTTLSGSAYSEGGGSFGIDTTGPLGDSGLAYRLVAERQSEDYWR NYGVDQHTLVAPSLSWTGERASLTLAYEYNDYVSPFDRGTVFTGGHPADISYDKRLDEKWANTVGISETATARFEYQLSDDWKTRLTYGWNNDRYSLSIA QPSTLSSSGVLRRQANGGHYDYETRYASWDFIGKQEVFGQQHDLLIGAEQEDSDKYRGKTYRNGVQGGFNIFSPSYGSLAEPSVVSTTTSNLSNQLTSSS IYLKDNWHLDDRWILVLGGRYQHYDQHIAQGLGASRNTNLNKNDDIFLPMAGLVFKVNEDLSLYGNYSRSFVPNEAVNDDGTTFDPEEGRSYEVGAKYAL APELDFNLAVFDIEKKNVVTTVATGVSEAAGKVGSQGVELDVTGRIAERWDMIGTYAYTHTEVLDDPKNEGNRLSQAPKHTASLYLTHHLQVPSGLGEWH AGGGARYVGDRAGDNANTFYMSSYTVADAFLRWDVPMAGYKTRLQLNVDNLFDKQYYPSSTDSPLQVNVGEPRTARLSASVTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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