Pseudomonas syringae pv. syringae B301D, PSYRB_RS16365 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B301D, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCATACCCGCGAACACCTGGCGGCGGTCATGCCGCTGGAGTCGGCGCTGGTGATGGTGATCCTGCGCTGGCCTGCCGACGTGCGTGAACTGGACACAC TGGAACTGAGCGACGCGGTGACCGACGCCAAGTTGAACAAGAGCGAACGTGACATGGCCAAGCGTCTGGTCAAGGACATGAGCGCTGACTGGCAGCCTGA GCAGTATCGCGACACCTTTCAGGACAAGATCATGCACCTGGTCAAGACCAAGGCAGACGAAGGCGAGATCGAGGATGTCGAGACCGATCCGGCCGAGGAA GAACGCAAGAGTGCCGATGTCATCGACCTCACCGACCTGCTGCGACGCAGTCTGGCGGGCAAGGGCGGGGCCGGTAAAGCCAAGACGAGCAAGCCTGCGG CGAAGGAAAAACCGGCCGACAAGGACGGTGCCAGGCCCAAGCGGCCGGCCGCACGCAAGAAAACCAGCAAAGCCTCTTGAGCCCTACGGAGTGACCGGTG
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| DNA Sequence for Gene |
>PSYRB_RS16365
|ligD
ATGGCCAAGCCCGCCAGTGAATACACCCGCAAGCGCAATTTCGCCATCACCTCCGAGCCTGCGGAGAGCAAGCGTAAGGGCAAAGGCAAGTCGCAGCCTG GCGCGCTCGGTTTCGTGATCCAGAAGCATGACGCACGGAACCTGCACTACGACTTTCGACTGGAGCTGGAGGGCACGCTCAAGAGCTGGGCCGTGCCCAA AGGTCCGAGCCTGGACCCCACGCAAAAGCGTCTGGCAGTGCATGTCGAAGACCATCCGCTGGACTACGCCGGCTTCGAGGGCAGTATCCCGCAGGGGCAG TACGGTGGCGGCGATGTGATTGTCTGGGACCGGGGTGTCTGGCAGCCGCACGGTGATCCGCAAAAGACCTACGAGGAAGGCAAACTCAAGTTCACCCTGG TCGGCGAGAAACTCAGCGGTGACTGGGCGCTGGTGCGTACCCGGCTCAAGGGCAGCGGCAGCAAGGAACAGTGGCTGCTGATCAAGGAAAAGGATGACGT CGCGCGACCTGCTGCCGAGTACGACATCACCCATGAGCAGCCGCAAAGCGTGATCAGTGGAGCTCATGTCGGCAAGCAACGCGGCACCTCGAAAAAGTCC GGGGCCAGCGCCGCCAAAGCCAAGGCCGCGACACCCGCCGCAGCAAAAGCGTCAATGCCCGCTGCAAAGCCGGCGCGCAGGAAGGCGAAATCGGCTTTCC TGGACACGCTTGCGCCGCAACTGGCGACGCTGGTGGAGGCGCCGCCAGCCGGTGACTGGCTGTATGAAATCAAATTCGATGGCTACCGCATGCTGACTCG TATTCAGGGCGACGATGTGCGGCTGTTTACCCGCAACGGGCATGACTGGACCGAGCGGCTGCCGGAACTGGTCAAGGCGCTCAAGGGCATGAAGCTGCGC GACAGCTGGTTCGACGGCGAAGTGGTGGTTCTCGATGAGCAGGGGCTGCCCGACTTCCAGGGCCTGCAGAATGCCTTTGACGCGGGCAACAGCAAGGACA TTCTGTATTACCTGTTCGACATGCCGTTTCTGAGTGCGGAGGACCTGCGTAAAGTGCCGCTCGAGCAGCGTCGGGATGCCTTGAAACAAGTTCTCGACGC ACAGAAAAGTCGCCTGTTGCGTTACTCGGATGCCTTTCAGGCAGGCCATCAGGACATTGTCGCGAGTGCTGCGGCAATGGGCCTGGAAGGGGTGATCGGC AAGCGTGCCGGCAGTGCCTACGTCAGCAAGCGCAATGCCGACTGGATCAAGCTCAAATGTCGCTTGCGACAGGAATTCGTGGTTGTCGGCTATACGGCGC CGCAGGGCAGCCGATCGGCGTTCGGGGCCTTGTTGCTTGCGGTCAATGCCGGTGAGGACGGGTTGATCTATGCCGGGCGGGTCGGCACCGGATTCACTGA AGTGAGCCTTGAGCAACTGCATAAACAGCTGAAGAAGTTGCAGCGCAAGGACTCACCGCTGGCCAAAAAGCTCTCCGCGTCCCAGGCGCGTGGCGTGCAG TGGGTGGCGCCGCAACTGGTCTGCGAAGCCGAGTTCGCCCAGTGGACCCGCGAAGGCATCGTGCGCCAGGCTGCCTTTGTCGGGCTGCGTAGCGACAAGC CCGCCAAGGACGTGGTGCGTGAAGACGCTCAGCCTGCCAAAGTGGCCAGCCAGCCCCCAACCACAACGGCAGCGCCCAAGGCACGCAAAAAGGCCGCGCA GGGAAAGGTTGATGTAGCGGGCACCGGCATCAGTCATCCGGACCGCGTCATCGACAGCAAGTCCGGCACCAGCAAGATCGAACTGGCGCAGTTTTACCAG TCCATCGCCGACTGGATTCTGCCCTACCTGAACAAGCGTCCCGTGGCTCTGCTGCGCTGTCCGGAGGGCATAGACGGTGAGCAGTTTTTCCAGAAGCATG CCGAACATCTGGCGATCCCGCACATCAGGCAACTGGATCGTGCCCTGGACCCCGGGCATGCCGCGCTGATGGAAATAGATTCGGTGCCGGCACTGGTCGG TGCTGCGCAAATGGGCGCCATCGAGCTGCATACCTGGGGCGCGACGCGTGACAGAATCGAAACGCCGGACCATTTCGTGCTGGACCTTGATCCCGATCCG GCACTGCCCTGGCGCAGCATGATCGAGGCCACGCAAATGGTGCTCGCCGTGCTGGAAGAACTGGGGCTGGAGGCTTTCCTCAAGACCAGCGGTGGCAAGG GCATGCACATCATTGTGCCGTTGGCGCGCCAGGCAGACTGGGACACGGTAAAGGCGTTCGCCAAGGCCATCGCCGAGTTTGCCAGCCGTCAGCTGCCGGA ACGCTTCACCGCCACCATGGGGCCGAAAAACCGCGTCGGAAAAATCTTCATCGATTACCTGCGCAACAGCCGCGGCGGCAGCACCGTAACCGCCTACTCA GTACGCGCCCGGCCCGGGTTGCCGGTCTCGGTGCCGATCGCGCTGGATGAGCTGGCGGGTCTGAAGTCGTCGGCACAGTGGGACATCACCAACCTTGAGC AGCGTTTGAAGCGGCTCAAGGACGACCCGTGGGCCGGTTACAGCAACCGGCGCAAAATCACGCAGAAGATGTGGAAACAACTGGGTGCGAAACGGCCTTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAAGGCCGCTGTCCGGGTTTTGCAAGGGGATATGTGGCCGGCACGCCAAGCAATAGCTGACATGCCGGCCGCACACCGGGGTGTCAGAGAATCCGGTA CAGCAGTCGCTCGACCCGCACGCGGCTGACACGCTTGAGAAACTTGCGCACGCCTTCGGGGTAGTTGGCCAGTGTGTCGAGCTCGTCATACTGGTTGACG CGCTGCGTGTTGCGCATCAAATGCGCGATTTCCGCTTCCCGTGGCTCGCTCCACTGGCCCTTCGGATCGTCGATCAGCAAGGCGTTTTCCAGGTCCAGAT TGAAGGCGCGAGGGTTCAGGTTGTTGCCGGTCAGCAGGGTGTAGCGCTGGTCGACCCAGATGCCCTTGAGGTGGAAGGTGTTATCGCCGTGTTTCCACAG GTGCACATTGAGGCGATGCTGGGCGATTGCCTTCTGATGCTTGTGGGCAAAGCGCCGCAGGCTGATCTCATAGAGATAGGGCAGGGCCGAGATCACCTTG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELEGTLKSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQ YGGGDVIVWDRGVWQPHGDPQKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQPQSVISGAHVGKQRGTSKKS GASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQLATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLR DSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLRKVPLEQRRDALKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIG KRAGSAYVSKRNADWIKLKCRLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKLQRKDSPLAKKLSASQARGVQ WVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVREDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQ SIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDP ALPWRSMIEATQMVLAVLEELGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYS VRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLKDDPWAGYSNRRKITQKMWKQLGAKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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