Pseudomonas syringae pv. syringae B301D, PSYRB_RS12810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B301D, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAAGTCTGTGTGCGTCTCAATGACAGCGACTGCCGGGTTTCGGTCGTCAGCGGCACGGTGCAGCTTTATCCCCTGCGCGGGCCTGTAGCGGCCTTGAA TGCGCAGCAGCAGGTCAGTTTGAAGCAGAGTGGAGTCGGTCCTGTCAGCGCCTTCGACGCCTTGCTGCCTGGCTGGCGCGACGATGTACTGACCGCGCAG AACCAGTCGCTGGGTGATTTCCTGCGCGAGCTGGGTCGCTACCGTCCGGGCCTGCTGCGCTGGGAGCCGGCGCTGGAAAACCTTCGGGTGACCGGGAGTT TCAGGCTCGACAATACCGACCGCGTGCTGTCCTTGCTGGCGGCCAGTCTGCCGGTGGACGTGCAGATGCGCACCCGTTACTGGGTGACCCTGGTGCCTCG AAAAAACATTTCGACAAAAAATAGTGCGTAGCGCTGTCCCTTTTTTTGGTCTCGCTGGTCATTCCAGATAAGTGCACAAAAAATACGAGAGCTTCCCTCT
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| DNA Sequence for Gene |
>PSYRB_RS12810
ATGTCCGCAGTGTCTTCCTACCGTTTGCGTCCGCTTTTGCAGTTCAGCCTGTTGCTGACGTTGAGTTCCAGTCCGTTGTTCATCTCGACCAGTTGGGCCG ACACGGCGGGCAGACGGGCCTATGAAGTGCCGGCCGGCAGCCTGAGCGCCGCGCTTACCCGTTTTGCCGGGCAGGCCGGTGTCAATCTGTCGGTAGACCC TGCGCTGGTGAATGGCCGGAACAGTTCGGGGTTGTCCGGCGAGTTCGCGGTCGAGGAAGGGTTTGCGCGTCTGCTGCAAGGTTCCGGCCTGCAATTGATA CCCGTCGGGGAGCAGGCTTACACGCTGATCCCGGCACCTCAAAGCGCCAGTGCAGGTTTGCAACTCGCCCCCACGTCGATCGTTGGCGACAGCGGTGTCA CGGACGGTCAGGATTACGCGGGCGGTCAGGTGGCACGCAAAGGCTCGCAAGGCATGTTGGGTTCGCGGGACTTCATGGAAACGCCATTCAGCATGACCAC CTACACCAAGGACGCGGTGAAAAACCAGCAGGCCCGAACCCTTGGCGATCTGATCGCCAGTGACCCGTCGGTGCGCGCCACCAACCCCGCAGGCGGGCGC TACGAGCAGTTCACCATTCGCGGCTTCAGCCTGTTCAACAGCGACGTTTCCTACAACGGCCTGTACGGCATCCTGCCCACTTACACGATCGACATGGAAA TGGCCGAACGGGTGGACATCCTCAAGGGGCCGAGCCAGTTGATCAACGGCATTTCGCCGCGAGGCAGTGTCGGCGGGGGCATCAACGTGGTCCCCAAACG CGCGACGGATAAACCGATCACCGAGCTCACCACCAGCTATGCCTCCAAGGGGCAGGTGGGTGCTGCAGTCGATGTAGCCCGTCGGTTTGGCGAAGACGAC AAGTTCGGGATCCGTTTCAACGGCGTGAAGCAGTCCGGCGACACAGAATGGGATCACCAGAGCGTCGATCGTGACATGGCCGTTTTGGGCCTGGATTTCC GCGGCGATCGCCTGCGTCTGTCGACGGACATCGGGCACACCGAACGCGACACTGATGCTCCGCAGGAGCGCGTGCAGGTCGGTGCCAACGCTAAGGTGCC CAACGCCAACGATGTGCGCGACAACTATGCGCAGTCCTGGAGCAAGGCGCGTACCAAGGATACCTTCGGCGCAGTGAATGCCGAATATGACCTCAGCGAC TCGGTCATGCTGTATGGCGGTGTCGGCGTGCGCAAAAGTAACCATGACTTCCTGCGCCATGCGGTATCGGTCACCAACGACGCAGGTGACTTCAGCGTTC AGCCGCGCGATTTCACCCGTGACGAAAATGTGCGCACCGCCACTGCCGGCGCTCGCAGCTGGTTCAACACCGGGCCGGTCAGCCACGAGGTCAACCTGGC TGCCAGCTATTTCTACATGGACTTTGAAAACGGTGGTGCGCGCTACGCAGCAGCGCCGAGCAACCTCTACAACCCGGTCGACACGCCGACACCCTCGAAC CCGACGCGCGCCGACTCCAAGGTTTACACCGAGAACCGCTTCAGCGGTGTGGCGCTGACTGACACGCTAGGATTTTTCGAGGACCGTCTGCTGCTGACGC TCGGCGCCCGCTGGCAGCGTGTCAAGGTTGATGACTGGACCGATGACGTGAAGGGCGACACCGCCTACGACGAGGAGAAGGTCTCACCGTCAGGCGGCAT TCTGTACAAGGTGACCGACGACTTTTCGGTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCTCCGTCGACCTCGGTGAACGAAGACCAG ATCTTCCCGCCGTTCGTCAGTCGTCAGGTCGAGGTCGGCGCCAAGTATGACCTGGGGTCATTTGCCTTCACCGCCAGCGTATTCCGTATCAAGCAACCGG CCTACGAGACCAATACCGCCTCGCGTGTATTCGGCCCGAACGGCAAGCGCCGTAACGACGGTGTCGAGCTGACCATGTTCGGTGAGCCGATGAAGGGTTT CCGTCTGCTGGGCGGGGTGATGTACATCGACAGCGAACTGACCAATACCGTCAACGGCACATTCGACGGCAACCGCGCACCGGCCACCCCCAAGTACAAC GTCAATCTGGGCGCCGAATGGGACGTCCCGGGCGTCAACGGCCTGACCCTGACCGGACGGGGCATCTACACCGGTTCGCAGTATCTGGATCAGGCCAATA GCAAAAGCATCGATTCATCGGAGCGTTTCGACGTAGGCGCGCGGTATGCCTTTAAGGTCGATCAGAAGGACATCACGCTGCGGGCCAATGTCGAGAACGT GATGAACAAGTACTACTGGAGTTCGGCCGGCGCGTCGGACGACAGCGAGCCGGGGCTGACTCTGTCGACACCGCGTACCTATCTGTTGTCGGCCACCATC GGTTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGATACGTGACGCCCAGGGAAGGGGGTCACGTATATAGCGAACGACCGGCAGTCCTCATCGAGGGATAACCTGTGTGCAGTATTAAATAATCAACCTC AACACGGCGACACAGCAGTTTGTTATTTAGATAGGCTGTTTTGTCATAACGCCAAAATAACAAATGGCCACGCTCAATAGTGGCACATTGAGTTATACCG ATTAATCCTGTCGGTATAACTGTGTGTCTTATTCATTATCAGGCGCGCAAAAAAGTTTATTTAAATTTCATCTTGTTTTTCGCAACAATGGGTTGCACTT TTAGGTAAATGATAATAATTTGCATCCGGAAATCCAGCGAGGACTCACAGATGTTGAATAATGGCTTATTGCACTCTACTACGTCGCAGAAAACCAATGC CAACTATCTGGACAGGCAGAGCAAGTTTGAATCGAATGTAAGGAGTTACCCCCGCAAGTTGCCATTGGCGATCGCCAAGGCACATGGCGTGTGGGTCACG
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| Amino Acid Sequence |
>TonB-dependent receptor
MSAVSSYRLRPLLQFSLLLTLSSSPLFISTSWADTAGRRAYEVPAGSLSAALTRFAGQAGVNLSVDPALVNGRNSSGLSGEFAVEEGFARLLQGSGLQLI PVGEQAYTLIPAPQSASAGLQLAPTSIVGDSGVTDGQDYAGGQVARKGSQGMLGSRDFMETPFSMTTYTKDAVKNQQARTLGDLIASDPSVRATNPAGGR YEQFTIRGFSLFNSDVSYNGLYGILPTYTIDMEMAERVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITELTTSYASKGQVGAAVDVARRFGEDD KFGIRFNGVKQSGDTEWDHQSVDRDMAVLGLDFRGDRLRLSTDIGHTERDTDAPQERVQVGANAKVPNANDVRDNYAQSWSKARTKDTFGAVNAEYDLSD SVMLYGGVGVRKSNHDFLRHAVSVTNDAGDFSVQPRDFTRDENVRTATAGARSWFNTGPVSHEVNLAASYFYMDFENGGARYAAAPSNLYNPVDTPTPSN PTRADSKVYTENRFSGVALTDTLGFFEDRLLLTLGARWQRVKVDDWTDDVKGDTAYDEEKVSPSGGILYKVTDDFSVYANYMEGLSQGKIAPSTSVNEDQ IFPPFVSRQVEVGAKYDLGSFAFTASVFRIKQPAYETNTASRVFGPNGKRRNDGVELTMFGEPMKGFRLLGGVMYIDSELTNTVNGTFDGNRAPATPKYN VNLGAEWDVPGVNGLTLTGRGIYTGSQYLDQANSKSIDSSERFDVGARYAFKVDQKDITLRANVENVMNKYYWSSAGASDDSEPGLTLSTPRTYLLSATI GF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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