Pseudomonas syringae pv. syringae B301D, PSYRB_RS12235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B301D, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTAGCTAACAGATTTTTTTGGAGTGGATAGCTTTTCTGAACCACTTGCCTCGCAAGTCGTTCGCAGCCAGACAGAGAACAACAAAACTGCCCCGAGG CAGCTGCCGAACTGGTTGGATCACTACGATGAAAGTGTCATCAGCGCTCAAAAAAATACGTTTGCTCTTGATCCCGCCTGCGGATCGCTCAAAAAAGATG TGAAGGGTCAGGTCGCCAAAAACAATAACAGGCCTCCCGAACAACAAAAAAGAGCATAGCAACACACCTTGAAGGGGAGCCCAGGCTCCCCTTCGTGCTT TCCGGCGTTCCGCCCTCTTCTCTCGTGACTGAAAAATACAGCCTGATCACTCCCGGTCCGCTTCGGCATGGGCGTTGACAGCACAATCCTACAGGTTTAC GTTAACGTAAAGGTCATAGCTGATAGACACTATAACCGCTTCCAGAAAGACGCGCCGTCCAAGAACAAAGCGCCACTCAAGAACAAAAAAGGAAAGCCCC
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| DNA Sequence for Gene |
>PSYRB_RS12235
ATGAGTTACCCCAGCCTGAACTTCGCACTTGGCGAAACCATCGACATGCTGCGCGACCAGCTGCAATCCTTCGTCGCCGCAGAGCTTGCCCCGCGCGCCG CGCAGATCGACAAGGACAACCTGTTCCCCGCCGACATGTGGCGCAAGTTCGGTGAAATGGGCGTACTGGGGATCACTGTCAGCGAAGAGTACGGCGGCGC GGGCCTGGGTTATCTGGCGCACGTCGTGGCGATGGAAGAAATCAGCCGTGGCTCGGCATCCGTGGCGCTTTCCTATGGCGCCCATTCCAATCTGTGCGTG AACCAGATCAACCGCAATGGCAGCCCGGCGCAAAAGGCCCGTTACCTGCCCAAGCTGATCAGCGGTGAACACGTTGGCGCGCTGGCCATGAGTGAACCCA ATGCAGGCTCGGACGTGGTGTCGATGAAACTGCGCGCCGACAAGCGCGGTGATCGCTATGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGGCCGGA TGCCGACACCTATGTGATCTACGCCAAGACCGACCTGGAAAAGGCAGCCCACGGCATCAGTGCGTTTATCGTCGAACGCGACTGGAAAGGCTTCTCGCGG GGCAGCAAGTTCGACAAGCTGGGCATGCGCGGCTCCAACACCTGCGAACTGTTTTTCGATGATGTCGAGGTGCCCGAGGAGAACCTGCTGGGCATGCTGG ATGGCGGAGTCAGAGTGCTGATGAGCGGCCTTGATTACGAACGCGTCGTGCTCTCCGGCGGACCGACCGGGATCATGCAGGCGTGCATGGACGTGGTGGT GCCCTACATTCACGACCGCAAACAGTTCGGCCAGAGCATCGGCGAGTTTCAGCTGATACAGGGCAAGGTCGCAGACATGTACACCCAGCTCAATGCCAGC CGGGCCTACCTGTATGCGGTCGCCCAGGCTTGTGACCGCGGCGAGACCACTCGCAAGGACGCTGCGGGGGTGATCCTGTACAGCGCCGAGCGCGCCACGC AGATGGCGCTGGAGGCCATCCAGATTCTCGGCGGCAATGGCTACATCAACGAGTTTCCGGCGGGCCGACTGTTGCGCGACGCCAAACTCTACGAGATCGG CGCAGGCACCAGTGAAATCCGGCGCATGCTCATCGGTCGCGAACTGTTCAACGAAACCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGGGAGCCGCCATGACCATTCTGCAGACCCGAATCAACACCCGCTCGCCTGAATTCACCCTCAATCGCGACGCCCTGCTCAAGCAGGTCGAAGCATTG CGCTCGCTGTTGAGCAACGTCCAGCAAGGAGGCGGCCCCAAAGCCCAGGAGCGCCACACCTCACGCGGCAAGTTGCTGCCGCGCGAGCGTATCAACTGTT TGCTGGACACCGGCTCACCGTTTCTGGAAATCGGCCAACTGGCTGCACATGAGGTATACGGCGAAGAGGTTCCGGCCGCTGGCGTGATCGCCGGAATCGG CCGGGTCGAGGGCGTCGAATGCATGATCATCGCCAACGATGCCACGGTCAAAGGCGGCTCCTATTACCCGCTGACCGTAAAGAAGCATCTGCGCGCACAG ACCATCGCCCAGCAGAACCGCCTGCCGTGCATCTATCTGGTGGATTCCGGCGGCGCCAACCTGCCGCGTCAGGATGAAGTGTTTCCCGACCGCGAACATT
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQLQSFVAAELAPRAAQIDKDNLFPADMWRKFGEMGVLGITVSEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGSPAQKARYLPKLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRYVLNGSKTWITNGPDADTYVIYAKTDLEKAAHGISAFIVERDWKGFSR GSKFDKLGMRGSNTCELFFDDVEVPEENLLGMLDGGVRVLMSGLDYERVVLSGGPTGIMQACMDVVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACDRGETTRKDAAGVILYSAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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