Pseudomonas syringae pv. syringae B301D, PSYRB_RS10905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B301D, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCGCGAACGCTACGGCAAAGTGTTCCACAACGACCCGATGCACCGGTGGTTCATGCTGTTCATTCTGGTCACCCCGCTGATCTGGTCGCTGCCCGGC ATGCCGGACTTCGTGACCCTGACCCTGGGCGTCAACGCGCTGAATATCATCGGATTGCCCGTCATCTCGCTGGGGCTGCTGATCATGTCCAATCAGAAGT CACTGTTGAGCAAGGAATACCGCAACAACTGGTTCGAAAACATCGCGCTGACCTTCGCCACAGGACTGGCGTTGTGGGTGGCGTTTCAGCTAAGGACGGA GTTGCTGGCGTGAGTGAGCAAGGTCCATTTCCTCAACGGAGATGGACCTCACGCGTTATCCCTATTCCCACCACTTGAATCCTGGTCCTCAAGCCCGGGA CGCCTGCTGATAGATGCGACGGTTACATCTCCCCTCAACAAACAGCAATAATTCTCAATGGAGATGTTATATTGTATCCATTACTATCAGGAAGTCTCAC
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| DNA Sequence for Gene |
>PSYRB_RS10905
ATGTCGTCTCGTAGAATCGCGTCTCTGGCAGGCTTGGCAATCGGGGTATTGGGCAGCAACAGCTATGGGCAGGAACAGCCGCAGACCATTGAACTGGAAA GCGTCAACGTCACTTCCGACTATCAGTACGAGACGGCGACCAGCCCGGTCCAGGGCTATCGCGCCACCCGCTCGGCCACGGCCACCAAGACCGACACCGC CATCGCGGATATCCCGCAGTCGATCAGCGTGGTACCTGCCTCAGTGCTCAAGGACCTTGGCAGCAACAATGTCGAGCGCGCGCTGGATTTTGCCGGCGGC GTATCCAAGCAGAATAACTTCGGCGGTCTGACGCTTTACGAGTACAGCATCCGCGGCTTCACCACGTCCGAGTTCTACAAGGACGGCTTCAGCGCCAACC GCGGTTACCCAGCCACGCCGGATGCCGCAAATATCGAACGCATCGAAGTGCTCAAAGGCCCCGCCGCCAGCCTGTACGGGCGTGGCGATCCGGGCGGCAC GGTCAACATCGTCAGCAAAAAACCCCAGCCCGAAGCCTTTACCACCTTGCAGACCAGCGCAGGCAGCTGGGATCGTTATCGCACCGCGCTGGACGTCAAC ACGCCGCTGGATGAAGAAGGCAATCTGCTTTCGCGGGTCAATCTGGCCGTCGAAGACAACAACAGCTTTCGTGACCATGTAGAGAGCAAACGGGTGTTTG TCGCCCCATCCTTCAGCTGGCAATTGAACCCTGACACCCGTCTGCTGGTGGAAACCGAGTTCGTGCGCCACACATCGACGTTCGACCGAGGCGTGGTCGC CCCCAACAACAAGTGGAGTGGCGTGTCGCGCTCGACCTTCCTCGGTGAGCCGGACGATGACATCGATAATGACAACAACATGATGCAGTTCGCCCTGGAC CACCAGCTCAACGATGTGTGGTCGCTGCGTCTGGCCAGCCATTACAAACAGGGCGATATGTCGGGTTTTGCCAGCGAGGCGCGCCCGCTGAATGCCGACG GGCACACGGTCAATCGCCGTTACCGTGAGCGCGACAACAACTGGCATGACAGCATCACCCAGTTGGAGTTACGCGGCCGTTTCGATGGCCTGGGCGTCGA GCACGAGGTGCTGATCGGCACCGAGTACGAGAACTATCGCAAGAACGAACGCGTCACGACCATCGCCGGCAGCCCTTACGCCATCGACATCTACAACCCG GTCTACGGCCAGCCGAAACCCGCTGGCGCACGCTCCGGTACTGATTTTTACGAGCATGTCGAAAGCCGCGCGCTGAACCTGCAGGACCAGATTGTCTTTA CCGACAAGCTGCGCGGCATGATCGGGGCACGCTACGAACACTTCGATCAGCAGGTCGATGACTTCACCACCAACGCCACCTCCGGGCAGCGCCAGGACGC TTTCACTCAGCGCGCCGGGTTGCTTTATCAACTCACACCGCAGGTCGGCCTGTTCGCCAACGCCTCCACCTCGTTCAAGCCCAACAATGGCCTGGATGCC GCAGGCAAAACCTTCGACCCGGAAGAAGGCGTCGGCTACGAAGTCGGAATCAAGAGCGAACTGTTCGACGATCGCCTGAGCACGACCCTCGCCGCCTTTC ATATCGAAAAGGAAAACGTTCTGGCCCTGGACCCCGGCACCGACACCAATCGCGCGGTGGGCAAGGCTCGCAGCCAAGGCTTCGATGTGCAATTTACCGG GCAGGTCAGCGAAGCCGTTCGGCTCATCGGTGCCTTCGCCTACATTGACGCCGAAGTGACCAAGGGCGACCAGAGCATCCCCACGGGCAGTCGCATCCTT GGCGTCGCCAAACACAGCGGCAGCCTGCTGGGCGTCTATGAGTTCCAGGAAGGCGCGTTGCGCGGCTCGGACGTGGGCGCGGCGTACACCTACGTCGGCG ACCGCTCGGGGCAGTCGGGCGCTGACTTCGAGTTGCCGGCCTACCAGACCGTAGACCTGCTGGCGCATTACAAAGCCAGCGACAACGTCACGGTGGGTTT GAACCTGAACAACATTTTCGATGAAAAATACTACGAGCGCTCCTACAGCAACTACTGGGTCGCGCCTGGCGAACCGCGCAACGTTACGGTGAGCCTGACC CTCAGCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCCATGACACCCGATTCAATAGACCCTCGCTCACAACAACAAGGACGCATCATGCTTTCAAGCAAACCTTTCCTGGCCCTGAGCCTGCTCGGCGCTTT ATTCGCCAGTCACGTCAATGCGCACGGCCTATGGACCGAACAGCGTCGCGGCAATATCGAAGTGGTCTACGGCCATGGCGCCGAAGACAACGCCTTCAAG GCGCAGAAAGTCAGCGGCGCGTGGGCCTACGACCTGCAAGGCAAAATGATCCCGGTGACGGTACAACGTCTTGAAGACCACGCGCGTCTGGTGCCGCTCA AGCCGCCTGCGGTCATGAGCATTGCGCTGGATAACGGCATGTGGACGCGCAACGCCGAGAAGCAATGGATCAATGAGGGCCGCAGCAAAGTGCCCAACGG CACCGACTCCATCCATACCTTCAAATACAGCGTGGCGATATACGCAGAAGGCGCGCACCTGCCAGCGTTCAACAAGCTGAATTTCGTGATCGTGCCGCAG
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| Amino Acid Sequence |
>TonB-dependent receptor
MSSRRIASLAGLAIGVLGSNSYGQEQPQTIELESVNVTSDYQYETATSPVQGYRATRSATATKTDTAIADIPQSISVVPASVLKDLGSNNVERALDFAGG VSKQNNFGGLTLYEYSIRGFTTSEFYKDGFSANRGYPATPDAANIERIEVLKGPAASLYGRGDPGGTVNIVSKKPQPEAFTTLQTSAGSWDRYRTALDVN TPLDEEGNLLSRVNLAVEDNNSFRDHVESKRVFVAPSFSWQLNPDTRLLVETEFVRHTSTFDRGVVAPNNKWSGVSRSTFLGEPDDDIDNDNNMMQFALD HQLNDVWSLRLASHYKQGDMSGFASEARPLNADGHTVNRRYRERDNNWHDSITQLELRGRFDGLGVEHEVLIGTEYENYRKNERVTTIAGSPYAIDIYNP VYGQPKPAGARSGTDFYEHVESRALNLQDQIVFTDKLRGMIGARYEHFDQQVDDFTTNATSGQRQDAFTQRAGLLYQLTPQVGLFANASTSFKPNNGLDA AGKTFDPEEGVGYEVGIKSELFDDRLSTTLAAFHIEKENVLALDPGTDTNRAVGKARSQGFDVQFTGQVSEAVRLIGAFAYIDAEVTKGDQSIPTGSRIL GVAKHSGSLLGVYEFQEGALRGSDVGAAYTYVGDRSGQSGADFELPAYQTVDLLAHYKASDNVTVGLNLNNIFDEKYYERSYSNYWVAPGEPRNVTVSLT LSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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