Pseudomonas syringae pv. syringae HS191, PSYRH_RS14470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae HS191, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGTGAGCATCGACGGGCAGGGCAAGCTGTTCATCAACAAGGACGAAATCCAGCCGGGCTTGCTGGAAAGCAGCCTGAAAGCGGCCAAGGACAAGACCC CTGACGTGCGCGTGCAATTGCAGGCGGACAATGGCGTCAACTACGGAGAAGTCGCGCGCGCCATGGCTTCCATCGAACGTGCCGGGATTACCAAATTGTC CGTGATCACTGCCAAGTAGCAGATTTATACCACCTACAGCTTCAACGGTTTTGGGCCGCATCCTCAGGCAGGTGCGGCCTTTTTTTGTCTGCATCGCAAG CATTTTTCAGTACTGACACAAATGCAGATACTTATTCGTTATTGGTATTTAAATATTTAAATCAATGTCATTAAGCTATATCGCATCGGGCTACCGGAAC ACCAATCAGACACCGTAATGATCGCCACCGTCCGCCGCACGGATCGCTCGTTGTAACCAGAACAAAGTTTCTGGATCAGGGATTTTAAAGGGGTAGTGGT
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| DNA Sequence for Gene |
>PSYRH_RS14470
ATGGGGAATTTCAAACGCAACGTATTGGCCACGGCGATTTTTTCAGCCAATTTGCTGAGCGTCGCGGGTATCAGTGCAAGCGCTTTTGCCGCCGAAGCGA CAGATGAACAAGCTAATCAGGGTGCGTCCACTCTGGGTACAGTGATCGTGACCGGCACCCGTGCGCAGGAGCGTACCGCCAGCGCCTCGCTGTCGCCTGT CGATGTGATCTCCGGTGACAGCCTGCGCAGTTCCGGCTCCAGCGAGTTGGGCGCCGTGCTGGCTCGTCTGATTCCTTCGATCAATTTCCCACGGCCGAGC CTGGTGGACGGTGCGGAGCTGACACGTCCGGCGCAACTGCGTGGCCTGTCGCCGGATCAGGTGCTGGTGCTGGTCAACGGCAAGCGCCGCCACACCTCTG CTTTCGTCAATCTGGGCGGGGCGGTCGGACGTAGTTCGGCACCTGCCGACCTGAATACCATTCCGCTGTCGGCCATCGACCATATCGAAGTCCTGCGCGA CGGTGCGTCAGCACGTTATGGGTCCGATGCCATCGCCGGGGTGATCAACATTATTCTCAAGAGCGCCGACCATGGCGGGTCGATTTCCAGCCAGTACGGC CAATACAAGAAGGGCGACGGAATTCAGCGCCAAGTATCGGGCAATACCGGTTTTGCCTTGGGCGACAATGGCACGTTCAACCTCTCAGGTGAGGGTGCCA ACAATGACTACACCAACCGTGCCGGTGACGACTTGCGAGCGTCCAGTGTCGGGTCCACCACTTACGGTCAGCAGGTGTTTCGCCAGGGCGAGCCACAGAC GCACGAGGGCAAACTGCAGTACAACGCCGAATATAGCTTTAATGACGCGGCGGAGTTCTACAGCTTCGGGGGCTACAGCAAGCGGCGTGGCGAAACCGCC GCGTTCTATCGGCCGAGCAATGCTTCGAATAACATTGCGGCGATTTATCCCAACGGCTATCTGCCGCTGATCAACGGCACGCTCGAAGACACCTCGCTGG TCGCTGGCCTGCGCGGGGAACTGGCTTATGACTGGCACTACGACGTGTCCGCCAACTATGGCAAAAACTCTTATGAGCTGCGCACCAAAACCATCAACAC CTCATTGGGACTGAACACGCCGCGCTCGTTTTACAACGGCACGCTGACCAATGATCAGAAGCAACTGAGCCTCGACCTTTCCAGAGAATTCAATGCAGCG TGGTTGCCTTATCCGGTATCGGTTGCGTTTGGCGCGGAATACCTGCGTCAGGGCTATCAGATCGAGGCAGGGCAGGCGGAGTCGTATTTCCAGACCGGCA GTTCCGGGCTGGGCGGTTTCCGCTCGGCGGATGCAGGCAGTTACTCGCGGCATAACTTCGCACAGTACCTGGACCTGGAAACCAATCTGACCGAAAAGCT CGGTGTGTCGGCTGCCGTCCGCCACGAGGACTACAGCGATTTCGGGTCCAATGTCAGCGGTTCGCTGTCAGCGCGCTACTATTTCACTCCGCAGGTGGCC TTGCGGGGCAGCGTATCGACAGGCTTCCGCGCGCCTTCGCTGGCGCAACAGAACTTTACCTTCACGTCGTCGCAACTGATTGGCAACACCATCCAGGAAG CGGGCACGTTTCCGGCCGGCAGTAACGTTGCACAACTGTTGGGTGCCGAAGACCTCAAGCCGGAAAAGTCCCGCAACTACAGCCTGGGCCTGGTACTCCA GCCGCTGGACAGCCTGACCGTGACTGCCGACGTCTACCGCATCGACATTCAGGACCGTATCTCGCTGTCCTCCAATCTGGTGCTCAATAACACCGCCATC AATTACCTGCGCAGTAATGGCGTAGGCGATATCAACTACACCAGTGCCCGCTATTTCACCAACGCCACGGACACCAGCACCGATGGCGTCGATCTGGTCG CCAATTACCGCTACCAGTTCGACAACGGTGTGCGCTGGAACAGCACGGTGGGTTACAACTACAACCACACCAAAGTCACCGACGTGAAGGCCAACCCGGC GATTCTCGATCAGTTGGGAGTGAATCTGGTGCGGGTAGATCGCAGGGAGCGCATCGGTTTGCTGGGTGACACCACGCCACAACACAAACTGACACTGGGC AATGACCTGACGCTCGGCAACTGGGCGCTGCACTCCAACCTGGTCCGCTACGGCGAGTTCACCAGCTATCAGGCCGACAAGGTCAACGACCAGACCTTCA GCGCCGCCTGGCTGCTGGACCTGGCGGTCGACTATAAACTCAAGAGCTGGGTCTTCACTCTGGGCGGCGACAACGTCACCGACAAATACCCGGAAAAGCT CAACGACTTCTCCTCCAGCGGCGGCAACCTGGCCTACAGCACATTCTCTCCCTACGGGTACAGCGGCGCTTATTACTACGGCAAGGTGACGTATAACTGG TAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGATTTGCCGCTGACTGTCGTTCCAATACGTTGCGTTTGCATAAAGCTCGTGATGCTGCAATACGACGCTATGCCTTGCTCCTGGGCACTGCACATAA ACGAAAGCGCTTTTTTGGCGCGATGGCACTGACGACGCAAATTGCGACGTAAGTGACAGGGCGAAGGAACCCGACGAAGTCGGGCCGGAAACGGAGCCAA GGGCTTTGGTCCCATCAAAGTGACTCGCCGAGTGGCGAAAAGGTGACCTGAGTCGAACCCCAATCTACCTGACATCAAAAAACCGCTGTGTGACGCGGAG CGTCGGCCGCTGTGACGCGCTGATAAGGAGCAGAAATCTTGCGGTATTGGACATGCGATGCTCCATGGGGGGGGGGCCAATACTGGAGCATATCGCTATA TAAAAATTTATTTAAATACCCTTTAGGAACATTAATAGACCCTCGTGGACACATGAAAACCCGGTAGCAGGACAGGCTTTAATATTCTAATTTTTTATAA
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| Amino Acid Sequence |
>ligand-gated channel
MGNFKRNVLATAIFSANLLSVAGISASAFAAEATDEQANQGASTLGTVIVTGTRAQERTASASLSPVDVISGDSLRSSGSSELGAVLARLIPSINFPRPS LVDGAELTRPAQLRGLSPDQVLVLVNGKRRHTSAFVNLGGAVGRSSAPADLNTIPLSAIDHIEVLRDGASARYGSDAIAGVINIILKSADHGGSISSQYG QYKKGDGIQRQVSGNTGFALGDNGTFNLSGEGANNDYTNRAGDDLRASSVGSTTYGQQVFRQGEPQTHEGKLQYNAEYSFNDAAEFYSFGGYSKRRGETA AFYRPSNASNNIAAIYPNGYLPLINGTLEDTSLVAGLRGELAYDWHYDVSANYGKNSYELRTKTINTSLGLNTPRSFYNGTLTNDQKQLSLDLSREFNAA WLPYPVSVAFGAEYLRQGYQIEAGQAESYFQTGSSGLGGFRSADAGSYSRHNFAQYLDLETNLTEKLGVSAAVRHEDYSDFGSNVSGSLSARYYFTPQVA LRGSVSTGFRAPSLAQQNFTFTSSQLIGNTIQEAGTFPAGSNVAQLLGAEDLKPEKSRNYSLGLVLQPLDSLTVTADVYRIDIQDRISLSSNLVLNNTAI NYLRSNGVGDINYTSARYFTNATDTSTDGVDLVANYRYQFDNGVRWNSTVGYNYNHTKVTDVKANPAILDQLGVNLVRVDRRERIGLLGDTTPQHKLTLG NDLTLGNWALHSNLVRYGEFTSYQADKVNDQTFSAAWLLDLAVDYKLKSWVFTLGGDNVTDKYPEKLNDFSSSGGNLAYSTFSPYGYSGAYYYGKVTYNW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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